Browse Element(s) Details


OsAffx.4958.1.S1_at

Description tigr:9634.m02762
TID=OsAffx.4958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2887011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28840Os.21854.2.S1_x_at11/116+16439867..16443416expressed protein
LOC_Os06g28840Os.21854.2.S1_at11/116+16439867..16443416expressed protein
LOC_Os06g28850OsAffx.15648.1.S1_at1/116+16446516..16449850Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28860OsAffx.5142.1.S1_x_at1/116+16450828..16452587hypothetical protein
LOC_Os06g28860Os.53842.2.S1_x_at1/116+16450828..16452587hypothetical protein
LOC_Os06g28870OsAffx.4958.1.S1_at11/116+16460788..16461818hypothetical protein
LOC_Os06g28870OsAffx.14940.1.S1_x_at1/116+16460788..16461818hypothetical protein
LOC_Os06g28880Os.48090.1.S1_at11/116+16470615..16480722expressed protein
LOC_Os06g28880Os.46610.1.S1_x_at2/116+16470615..16480722expressed protein
LOC_Os06g28880Os.24082.1.S1_at1/116+16470615..16480722expressed protein
LOC_Os06g28890OsAffx.15653.1.S1_at11/116+16480196..16484467hypothetical protein
LOC_Os06g28890OsAffx.3347.1.S1_at1/116+16480196..16484467hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4958.1.S1_at--648--4251Chr06:16460897..16460921 (25 bp)
CCGGGCTTGCTCTCGCGGTGGCAAA
LOC_Os06g28870
OsAffx.4958.1.S1_at--605--10711Chr06:16460903..16460927 (25 bp)
TTGCTCTCGCGGTGGCAAAGCCGGT
LOC_Os06g28870
OsAffx.4958.1.S1_at--495--6971Chr06:16460966..16460990 (25 bp)
GTAGCGCGCGGCTGAAGCTCGCCAG
LOC_Os06g28870
OsAffx.4958.1.S1_at--881--2691Chr06:16460980..16461004 (25 bp)
AAGCTCGCCAGGAAGCGGCGGAGGT
LOC_Os06g28870
OsAffx.4958.1.S1_at--138--3992Chr06:16461068..16461092 (25 bp)
CGGGCGATGCTTTATATGGGCGTAG
LOC_Os06g28870
OsAffx.4958.1.S1_at--628--7491Chr06:16461157..16461181 (25 bp)
GTGGTGGCTCGATTCCAGCGCAATT
LOC_Os06g28870
OsAffx.4958.1.S1_at--8--8331Chr06:16461162..16461186 (25 bp)
GGCTCGATTCCAGCGCAATTTTTGG
LOC_Os06g28870
OsAffx.4958.1.S1_at--69--7131Chr06:16461223..16461247 (25 bp)
GTCATGCCCACGCTGTCGGTTGCGA
LOC_Os06g28870
OsAffx.4958.1.S1_at--149--611Chr06:16461226..16461250 (25 bp)
ATGCCCACGCTGTCGGTTGCGAGCG
LOC_Os06g28870
OsAffx.4958.1.S1_at--855--5031Chr06:16461301..16461325 (25 bp)
GCAGTTGCCGGCTCTGGATGGCTGG
LOC_Os06g28870
OsAffx.4958.1.S1_at--491--9312Chr06:16461764..16461788 (25 bp)
TCCCGATCGAAAATCAGGGCGTTAT
LOC_Os06g28870
Target Sequence 
CCGGGCTTGCTCTCGCGGTGGCAAAGCCGGTGGTGGTGGCGGCGCGATGCGGCGGCGGCTATGGCGGCGGTAGCGCGCGG
CTGAAGCTCGCCAGGAAGCGGCGGAGGTGGGAGACGGCGTGGGGAGAGCGAGTAAGGCGACAGGAAGCTCGAGGGAGGAG
GGGAAACGGGCCGGGCGATGCTTTATATGGGCGTAGGGGAGGGAAATCGTGGCCGAGAGGGGCGGAATCGGGCGGCAACG
GCCGACGCCGACGTGGGGTGGTGGTGGCTCGATTCCAGCGCAATTTTTGGGGAAAAGTGGGGGATTTGGTGGAGGAGATG
GAGGGGGTCATGCCCACGCTGTCGGTTGCGAGCGCGGGGGCCGAAAATGGGCGGAAGAGGCGGCGACGTGGGGTGGCAAT
GGCGGCAGTTGCCGGCTCTGGATGGCTGGGGGTTAGGGATGACAGAAAAATGCATTATTTAATGATTTTTATTCCCGATC
GAAAATCAGGGCGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis