CREP Browser

OsAffx.5000.1.S1_at

Description

tigr:9634.m03233
TID=OsAffx.5000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g34340	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g34300	NA	NA	6	+	19954812..19955737	hypothetical protein
LOC_Os06g34310	Os.53479.1.S1_x_at	2/11	6	+	19955919..19960135	Zinc knuckle family protein
LOC_Os06g34310	OsAffx.15648.1.S1_at	1/11	6	+	19955919..19960135	Zinc knuckle family protein
LOC_Os06g34310	Os.25754.2.S1_x_at	1/11	6	+	19955919..19960135	Zinc knuckle family protein
LOC_Os06g34310	OsAffx.15536.1.S1_x_at	1/11	6	+	19955919..19960135	Zinc knuckle family protein
LOC_Os06g34320	OsAffx.20387.1.S1_x_at	2/11	6	+	19960878..19965529	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g34330	NA	NA	6	+	19972236..19972514	expressed protein
LOC_Os06g34340	OsAffx.5000.1.S1_at	10/11	6	+	19979691..19980879	hypothetical protein
LOC_Os06g34350	NA	NA	6	+	19991736..19992110	hypothetical protein
LOC_Os06g34360	OsAffx.5001.1.S1_at	7/11	6	+	19999030..19999818	Zinc finger, C3HC4 type family protein
LOC_Os06g34370	NA	NA	6	+	20005381..20006739	transposon protein, putative, Pong sub-class

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5000.1.S1_at--649--1081	1	Chr06:19980808..19980832 (25 bp)	TTGTCCCCTACACCAGGAGGTTGGA	LOC_Os06g34340
OsAffx.5000.1.S1_at--180--617	1	Chr06:19980792..19980816 (25 bp)	GAGGTTGGATCTTGTGTCCTAGAGC	LOC_Os06g34340
OsAffx.5000.1.S1_at--331--643	1	Chr06:19980785..19980809 (25 bp)	GATCTTGTGTCCTAGAGCTCGGGCC	LOC_Os06g34340
OsAffx.5000.1.S1_at--82--745	1	Chr06:19980779..19980803 (25 bp)	GTGTCCTAGAGCTCGGGCCGATCGA	LOC_Os06g34340
OsAffx.5000.1.S1_at--720--423	1	Chr06:19980762..19980786 (25 bp)	CCGATCGAGAGGTGGGCGCTAGCGC	LOC_Os06g34340
OsAffx.5000.1.S1_at--66--761	1	Chr06:19980706..19980730 (25 bp)	GGGCAGAATAGAGAACTACCAACAT	LOC_Os06g34340
OsAffx.5000.1.S1_at--890--547	1	Chr06:19980694..19980718 (25 bp)	GAACTACCAACATTGGATTGCGCCA	LOC_Os06g34340
OsAffx.5000.1.S1_at--226--327	1	Chr06:19980687..19980711 (25 bp)	CAACATTGGATTGCGCCACCACGAG	LOC_Os06g34340
OsAffx.5000.1.S1_at--1152--439	1	NONE	GCCACCACGAGGTGAGAGGTCACCT	NONE
OsAffx.5000.1.S1_at--438--101	1	Chr06:19980231..19980255 (25 bp)	AGGTCACCTCCGACGGACCTATGTG	LOC_Os06g34340
OsAffx.5000.1.S1_at--652--395	1	Chr06:19980218..19980242 (25 bp)	CGGACCTATGTGTGGGCCCGTCAGA	LOC_Os06g34340

Target Sequence

TTGTCCCCTACACCAGGAGGTTGGATCTTGTGTCCTAGAGCTCGGGCCGATCGAGAGGTGGGCGCTAGCGCTCAGGGTGA
GGAAGGCAGAGGAGGTGCTATGGGGCAGAATAGAGAACTACCAACATTGGATTGCGCCACCACGAGGTGAGAGGTCACCT
CCGACGGACCTATGTGTGGGCCCGTCAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details