Browse Element(s) Details


OsAffx.5001.1.S1_at

Description tigr:9634.m03235
TID=OsAffx.5001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g343607/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34340OsAffx.5000.1.S1_at10/116+19979691..19980879hypothetical protein
LOC_Os06g34350NANA6+19991736..19992110hypothetical protein
LOC_Os06g34360OsAffx.5001.1.S1_at7/116+19999030..19999818Zinc finger, C3HC4 type family protein
LOC_Os06g34370NANA6+20005381..20006739transposon protein, putative, Pong sub-class
LOC_Os06g34380OsAffx.11235.1.S1_at1/116+20007349..20008578transposon protein, putative, Pong sub-class
LOC_Os06g34390Os.50309.1.S1_at11/116+20009531..20011039Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34400OsAffx.15738.1.S1_at10/116+20018208..20020124Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34410OsAffx.15737.1.S1_at11/116+20024004..20024330hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5001.1.S1_at--399--3451Chr06:19999060..19999084 (25 bp)
CAGTACACGGGCATCGGCGCATTCG
LOC_Os06g34360
OsAffx.5001.1.S1_at--339--1171Chr06:19999061..19999085 (25 bp)
AGTACACGGGCATCGGCGCATTCGT
LOC_Os06g34360
OsAffx.5001.1.S1_at--673--7031Chr06:19999062..19999086 (25 bp)
GTACACGGGCATCGGCGCATTCGTC
LOC_Os06g34360
OsAffx.5001.1.S1_at--309--3991Chr06:19999067..19999091 (25 bp)
CGGGCATCGGCGCATTCGTCGCCAT
LOC_Os06g34360
OsAffx.5001.1.S1_at--609--4971Chr06:19999070..19999094 (25 bp)
GCATCGGCGCATTCGTCGCCATCGT
LOC_Os06g34360
OsAffx.5001.1.S1_at--1030--4971Chr06:19999097..19999121 (25 bp)
GCATCGTCGTCCTGGCCGTCATCTT
LOC_Os06g34360
OsAffx.5001.1.S1_at--499--7131Chr06:19999114..19999138 (25 bp)
GTCATCTTCTACACCCGTTCGTCCG
LOC_Os06g34360
OsAffx.5001.1.S1_at--922--5731NONE
GACGTTTCCGTGCTCCCGACGTTCA
NONE
OsAffx.5001.1.S1_at--748--7291NONE
GTGCTCCCGACGTTCAGAACAGACA
NONE
OsAffx.5001.1.S1_at--690--4791NONE
GCTCCCGACGTTCAGAACAGACATT
NONE
OsAffx.5001.1.S1_at--968--4191NONE
CCCGACGTTCAGAACAGACATTTTA
NONE
Target Sequence 
CAGTACACGGGCATCGGCGCATTCGTCGCCATCGTCGGCATCGTCGTCCTGGCCGTCATCTTCTACACCCGTTCGTCCGC
CCGTCACGCCGCCCCCGGGGCGGGGCCCGACGCGGTCACCGCGCTCCAGGGGCAGCAGCAGCAGCGCGGCCTCGGCCTCG
GCCCCGACGACGTTTCCGTGCTCCCGACGTTCAGAACAGACATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis