Browse Element(s) Details


OsAffx.5018.1.S1_at

Description tigr:9634.m03345
TID=OsAffx.5018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3540011/11hypothetical protein
LOC_Os03g481501/11expressed protein
LOC_Os08g164901/11hypothetical protein
LOC_Os11g282201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35350Os.39476.1.S1_at4/116+20611753..20613962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35350OsAffx.8455.1.S1_at1/116+20611753..20613962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35360OsAffx.8589.1.S1_at1/116+20616043..20619276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35370Os.7500.1.S1_at4/116+20620460..20621802Exopolygalacturonase precursor, putative
LOC_Os06g35380NANA6+20623892..20626350retrotransposon protein, putative, unclassified
LOC_Os06g35390NANA6+20626482..20628670retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35400OsAffx.5018.1.S1_at11/116+20630819..20631417hypothetical protein
LOC_Os06g35410Os.52961.1.S1_at11/116+20634355..20638707Growth regulator, putative, expressed
LOC_Os06g35420NANA6+20644220..20645832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35430NANA6+20646758..20649698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35440Os.10703.2.S1_x_at1/116+20650015..20653835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35440Os.51348.1.S1_x_at1/116+20650015..20653835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35450NANA6+20654817..20657113hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5018.1.S1_at--802--851Chr06:20630868..20631107 (25 bp)
ATGGCATGTTTAGCTTCTGCATTCC
LOC_Os06g35400
OsAffx.5018.1.S1_at--205--4951Chr06:20631101..20631125 (25 bp)
GCATTCCCCTCCGTGTGGAGGCAAA
LOC_Os06g35400
OsAffx.5018.1.S1_at--115--8231Chr06:20631120..20631144 (25 bp)
GGCAAACCAGTTCATAATCCATGGA
LOC_Os06g35400
OsAffx.5018.1.S1_at--93--3511Chr06:20631139..20631163 (25 bp)
CATGGATTAGCTGTGGTCTGTGTCA
LOC_Os06g35400
OsAffx.5018.1.S1_at--1116--7178Chr11:15725787..15725806 (20 bp)
GTCTGTGTCAGAGTTACGGATAAGG
LOC_Os11g28220
OsAffx.5018.1.S1_at--119--1031Chr06:20631176..20631200 (25 bp)
AGGTATACCATCTATCCTGGATATA
LOC_Os06g35400
OsAffx.5018.1.S1_at--700--231Chr06:20631196..20631220 (25 bp)
ATATACGATGAGTACCGATACGGTA
LOC_Os06g35400
OsAffx.5018.1.S1_at--337--18131Chr11:15091314..15091398 (25 bp)
ACCCGCGCGTATACGGATAGATCCT
NONE
OsAffx.5018.1.S1_at--222--1931Chr06:20631234..20631258 (25 bp)
ACGGATAGATCCTATATGCGTTAAG
LOC_Os06g35400
OsAffx.5018.1.S1_at--585--6493Chr11:11785905..11785924 (20 bp)
GATAGAAACAGAATCCACGGGTGGA
NONE
OsAffx.5018.1.S1_at--493--5992Chr06:20631315..20631339 (25 bp)
GAGACTGAGTCTTTACCATATTGTG
LOC_Os06g35400
Target Sequence 
ATGGCATGTTTAGCTTCTGCATTCCCCTCCGTGTGGAGGCAAACCAGTTCATAATCCATGGATTAGCTGTGGTCTGTGTC
AGAGTTACGGATAAGGTATACCATCTATCCTGGATATACGATGAGTACCGATACGGTATACCCGCGCGTATACGGATAGA
TCCTATATGCGTTAAGGAAATCTATCACGTGATAGAAACAGAATCCACGGGTGGAAGGAGTCCTACTCGGACGAGACTGA
GTCTTTACCATATTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis