Browse Element(s) Details


OsAffx.5044.1.S1_at

Description tigr:9634.m03650
TID=OsAffx.5044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3831010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38294Os.11807.1.S1_at11/116+22654621..22663966nitrate transporter, putative, expressed
LOC_Os06g38310OsAffx.5044.1.S1_at10/116+22671920..22673617hypothetical protein
LOC_Os06g38320Os.19296.2.S1_at11/116+22698046..22704079expressed protein
LOC_Os06g38320Os.19296.1.S1_at10/116+22698046..22704079expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5044.1.S1_at--658--6171NONE
GAGGAGGCGGAATATAACAAGAGAA
NONE
OsAffx.5044.1.S1_at--338--9811Chr06:22673437..22673461 (25 bp)
TAACAAGAGAAGCTTAACTGACCTT
LOC_Os06g38310
OsAffx.5044.1.S1_at--650--5391Chr06:22673445..22673469 (25 bp)
GAAGCTTAACTGACCTTGGTCAAAT
LOC_Os06g38310
OsAffx.5044.1.S1_at--279--3831Chr06:22673454..22673478 (25 bp)
CTGACCTTGGTCAAATTAAACACAA
LOC_Os06g38310
OsAffx.5044.1.S1_at--1073--6032Chr06:22673489..22673513 (25 bp)
GAGATCAATGGTTTAGATTACTTTC
LOC_Os06g38310
OsAffx.5044.1.S1_at--307--10453Chr06:22673501..22673525 (25 bp)
TTAGATTACTTTCTACTACCAGTAG
LOC_Os06g38310
OsAffx.5044.1.S1_at--730--3711Chr06:22673513..22673537 (25 bp)
CTACTACCAGTAGATTACGTTATAG
LOC_Os06g38310
OsAffx.5044.1.S1_at--185--151Chr06:22673526..22673550 (25 bp)
ATTACGTTATAGTGGAGCTCTTAGA
LOC_Os06g38310
OsAffx.5044.1.S1_at--896--7511Chr06:22673537..22673561 (25 bp)
GTGGAGCTCTTAGAAGTAGCTACAC
LOC_Os06g38310
OsAffx.5044.1.S1_at--286--6971Chr06:22673552..22673576 (25 bp)
GTAGCTACACAAATTAAGCAGCCCA
LOC_Os06g38310
OsAffx.5044.1.S1_at--861--3131Chr06:22673563..22673587 (25 bp)
AATTAAGCAGCCCACATATTACAAA
LOC_Os06g38310
Target Sequence 
GAGGAGGCGGAATATAACAAGAGAAGCTTAACTGACCTTGGTCAAATTAAACACAATATATCAGATGAGATCAATGGTTT
AGATTACTTTCTACTACCAGTAGATTACGTTATAGTGGAGCTCTTAGAAGTAGCTACACAAATTAAGCAGCCCACATATT
ACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis