Browse Element(s) Details


OsAffx.5049.1.S1_s_at

Description tigr:9634.m03686
TID=OsAffx.5049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38629NANA6+22935861..22936325NA
LOC_Os06g38640OsAffx.27992.1.S1_at11/116+22937993..22939810Leucine Rich Repeat family protein
LOC_Os06g38650OsAffx.5048.1.S1_at11/116+22950399..22953848Leucine Rich Repeat family protein, expressed
LOC_Os06g38660OsAffx.5049.1.S1_s_at11/116+22955672..22956310expressed protein
LOC_Os06g38660Os.7966.1.S1_at11/116+22955672..22956310expressed protein
LOC_Os06g38670OsAffx.15823.1.S1_at10/116+22957564..22965353Leucine Rich Repeat family protein, expressed
LOC_Os06g38680Os.49927.1.S1_at11/116+22966819..22970854expressed protein
LOC_Os06g38700NANA6+22978951..22981668transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5049.1.S1_s_at--605--7711Chr06:22956215..22956239 (25 bp)
GGTGGCCTATTCATCCGGTGATCCT
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--317--8451Chr06:22956213..22956237 (25 bp)
TGGCCTATTCATCCGGTGATCCTCC
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--125--4491Chr06:22956179..22956203 (25 bp)
GCCGGTGCCCGTTCCAGGCAGTGAT
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--1013--7771Chr06:22956176..22956200 (25 bp)
GGTGCCCGTTCCAGGCAGTGATCTT
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--849--4791Chr06:22956145..22956169 (25 bp)
GCTCCGGCCGCCAAGTCTCAAGAAG
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--443--5411Chr06:22955983..22956148 (25 bp)
GAAGCCTCTCCAGCTGTTCCGGTGA
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--1098--2651Chr06:22955982..22956147 (25 bp)
AAGCCTCTCCAGCTGTTCCGGTGAT
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--581--3771Chr06:22955978..22956143 (25 bp)
CTCTCCAGCTGTTCCGGTGATCGAT
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--947--9491Chr06:22955977..22956142 (25 bp)
TCTCCAGCTGTTCCGGTGATCGATC
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--628--7391Chr06:22955962..22955986 (25 bp)
GTGATCGATCCTAGCAAAGAGGAGC
LOC_Os06g38660
OsAffx.5049.1.S1_s_at--203--9391Chr06:22955958..22955982 (25 bp)
TCGATCCTAGCAAAGAGGAGCGTAT
LOC_Os06g38660
Target Sequence 
GGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCG
CCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5049.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis