Browse Element(s) Details


OsAffx.5075.1.S1_x_at

Description tigr:9634.m03976
TID=OsAffx.5075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4133011/11hypothetical protein
LOC_Os11g179001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g234701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41310OsAffx.28040.1.S1_at11/116+24714861..24715433hypothetical protein
LOC_Os06g41320OsAffx.15875.1.S1_at11/116+24732921..24735919transposon protein, putative, unclassified
LOC_Os06g41320OsAffx.23566.1.S1_at1/116+24732921..24735919transposon protein, putative, unclassified
LOC_Os06g41330OsAffx.5075.1.S1_x_at11/116+24739377..24740424hypothetical protein
LOC_Os06g41330OsAffx.5075.1.S1_at10/116+24739377..24740424hypothetical protein
LOC_Os06g41340Os.28346.3.S1_x_at9/116+24750001..24760475retrotransposon protein, putative, unclassified
LOC_Os06g41340OsAffx.17950.1.S1_at8/116+24750001..24760475retrotransposon protein, putative, unclassified
LOC_Os06g41340Os.28346.1.S1_x_at5/116+24750001..24760475retrotransposon protein, putative, unclassified
LOC_Os06g41340Os.28346.5.S1_x_at1/116+24750001..24760475retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5075.1.S1_x_at--527--2791Chr06:24739417..24739441 (25 bp)
AAGAGTGCGAGCCTGAGTCTGTTTT
LOC_Os06g41330
OsAffx.5075.1.S1_x_at--683--1131Chr06:24739420..24739444 (25 bp)
AGTGCGAGCCTGAGTCTGTTTTCAT
LOC_Os06g41330
OsAffx.5075.1.S1_x_at--334--4611Chr06:24739423..24739447 (25 bp)
GCGAGCCTGAGTCTGTTTTCATCAG
LOC_Os06g41330
OsAffx.5075.1.S1_x_at--165--3871Chr06:24739429..24739453 (25 bp)
CTGAGTCTGTTTTCATCAGGTCTCG
LOC_Os06g41330
OsAffx.5075.1.S1_x_at--10--7132Chr07:15306597..15306616 (20 bp)
GTCTGTTTTCATCAGGTCTCGGGTT
NONE
OsAffx.5075.1.S1_x_at--1061--94110Chr12:10991489..10991510 (22 bp)
TCGGGTTTCCTTGCTTGGGAAGCTC
NONE
OsAffx.5075.1.S1_x_at--977--4351Chr06:24740104..24740128 (25 bp)
CCACCAAGCACACAGGGCACGGGAG
LOC_Os06g41330
OsAffx.5075.1.S1_x_at--618--1491Chr06:24740110..24740134 (25 bp)
AGCACACAGGGCACGGGAGGCACCC
LOC_Os06g41330
OsAffx.5075.1.S1_x_at--1122--6191Chr06:24740126..24740150 (25 bp)
GAGGCACCCGGCTCGCAGAGCAGGA
LOC_Os06g41330
OsAffx.5075.1.S1_x_at--700--7951Chr06:24740172..24740196 (25 bp)
GGATCCGTGTCGCACCGACGACGAC
LOC_Os06g41330
OsAffx.5075.1.S1_x_at--1064--3391Chr06:24740263..24740287 (25 bp)
CAGCAGCCAAGAGCGACGGGCTCAG
LOC_Os06g41330
Target Sequence 
AAGAGTGCGAGCCTGAGTCTGTTTTCATCAGGTCTCGGGTTTCCTTGCTTGGGAAGCTCCTCCCCTCCCCACCAAGCACA
CAGGGCACGGGAGGCACCCGGCTCGCAGAGCAGGAGGCGCGCGCGGGCGACCGGCCGGATCCGTGTCGCACCGACGACGA
CGAGGAGAAGGAGGCGCCCAAGAGCGGCGACGGCAGACGGTCGCGGCGGAGGTGGGCTCAGGAGCGGCAGCAGCCAAGAG
CGACGGGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5075.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis