Browse Element(s) Details


OsAffx.5079.1.S1_at

Description tigr:9634.m04040
TID=OsAffx.5079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serine protease-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4188011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41850OsAffx.28052.1.S1_at11/116+25092245..25093297Strictosidine synthase family protein
LOC_Os06g41860NANA6+25097380..25098156hypothetical protein
LOC_Os06g41870NANA6+25107487..25107870hypothetical protein
LOC_Os06g41880OsAffx.5079.1.S1_at11/116+25117152..25125145Subtilisin N-terminal Region family protein, expressed
LOC_Os06g41890NANA6+25130761..25131535hypothetical protein
LOC_Os06g41900OsAffx.22940.1.S1_s_at11/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.2.S1_s_at11/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.5.S1_at11/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900Os.35344.3.S1_x_at10/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.5.S1_x_at10/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900Os.35344.18.S1_x_at10/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.3.S1_x_at9/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.2.S1_at6/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.31552.2.S1_at1/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41910Os.57084.1.S1_at10/116+25144629..25147011expressed protein
LOC_Os06g41920OsAffx.28054.1.S1_s_at11/116+25149784..25150239hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009733biological_processresponse to auxin stimulus
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0010102biological_processlateral root morphogenesis
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004289molecular_functionsubtilase activity
GO:0004291molecular_functionsubtilisin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5079.1.S1_at--526--2951Chr06:25124633..25124657 (25 bp)
AATGGAAGAACTGCAACCCCTTTCG
LOC_Os06g41880
OsAffx.5079.1.S1_at--671--6371Chr06:25124678..25124702 (25 bp)
GATCCCATCAAAGCTCTTAATCCAG
LOC_Os06g41880
OsAffx.5079.1.S1_at--1116--571Chr06:25124697..25124721 (25 bp)
ATCCAGGGATCATCTTTGACGCACA
LOC_Os06g41880
OsAffx.5079.1.S1_at--768--911Chr06:25124755..25124779 (25 bp)
AGGCTATGATGACCACTCCTTACAT
LOC_Os06g41880
OsAffx.5079.1.S1_at--271--3831Chr06:25124829..25124853 (25 bp)
CTGCTGCTCTAAATTACCCATCAAT
LOC_Os06g41880
OsAffx.5079.1.S1_at--725--5911Chr06:25124875..25124899 (25 bp)
GAGCTACTCAGTCACTCGAACTATG
LOC_Os06g41880
OsAffx.5079.1.S1_at--804--6191Chr06:25124916..25124940 (25 bp)
GAGGAAGTGCTTACCATGCTTTCGT
LOC_Os06g41880
OsAffx.5079.1.S1_at--544--9091Chr06:25124944..25124968 (25 bp)
TGCTCCACTGGGTATCAATGTCACG
LOC_Os06g41880
OsAffx.5079.1.S1_at--785--1371Chr06:25125012..25125036 (25 bp)
AGACTTTCACGGTTAACTTCCATGT
LOC_Os06g41880
OsAffx.5079.1.S1_at--245--8671Chr06:25125034..25125058 (25 bp)
TGTGGATGTGCCTCAACGGGATCAT
LOC_Os06g41880
OsAffx.5079.1.S1_at--40--2871Chr06:25125086..25125110 (25 bp)
AAGGATGCTCGACTGATGATGCCAT
LOC_Os06g41880
Target Sequence 
AATGGAAGAACTGCAACCCCTTTCGATTTCGGATCAGGTTTTGCGGATCCCATCAAAGCTCTTAATCCAGGGATCATCTT
TGACGCACATCCTGAAGATTACAAGTCATTCCTATGTTCTATAGGCTATGATGACCACTCCTTACATCTAATAACACAAG
ATAACAGCAGCTGCACTGACAGAGCTCCATCATCAGCTGCTGCTCTAAATTACCCATCAATTACCATACCAAACCTGAAG
AAGAGCTACTCAGTCACTCGAACTATGACGAATGTAGGATTCCGAGGAAGTGCTTACCATGCTTTCGTGTCTGCTCCACT
GGGTATCAATGTCACGGTGACTCCAAAAGTTCTAGTCTTCGAGAATTACGGTGCGAAGAAGACTTTCACGGTTAACTTCC
ATGTGGATGTGCCTCAACGGGATCATGTATTTGGTTCCTTGTTGTGGCATGGAAAGGATGCTCGACTGATGATGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis