Browse Element(s) Details


OsAffx.5094.1.S1_at

Description tigr:9634.m04197
TID=OsAffx.5094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4347011/11Cytochrome P450 71D10, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43420OsAffx.15909.1.S1_at11/116+26096157..26097854Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.22415.1.S1_s_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.8493.1.A1_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43440OsAffx.5093.1.S1_at11/116+26107629..26108557Cytochrome P450 71D8, putative, expressed
LOC_Os06g43450NANA6+26110126..26113417retrotransposon protein, putative, unclassified
LOC_Os06g43460NANA6+26114047..26120202retrotransposon protein, putative, unclassified
LOC_Os06g43470OsAffx.5094.1.S1_at11/116+26122170..26123153Cytochrome P450 71D10, putative
LOC_Os06g43480OsAffx.15910.1.S1_at11/116+26136032..26138346Cytochrome P450 family protein
LOC_Os06g43490OsAffx.28079.1.S1_at11/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43490Os.50339.1.S1_at1/116+26144809..26147455Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5094.1.S1_at--55--4631Chr06:26122592..26122616 (25 bp)
GCGAGTGTCGTCAACCTGAGCAGGA
LOC_Os06g43470
OsAffx.5094.1.S1_at--1005--991Chr06:26122571..26122595 (25 bp)
AGGATGATATCGTCGTGCGTCGCCG
LOC_Os06g43470
OsAffx.5094.1.S1_at--124--4311Chr06:26122531..26122555 (25 bp)
CCATCATCGGAAGCGGCCGGTTCAA
LOC_Os06g43470
OsAffx.5094.1.S1_at--532--5651Chr06:26122505..26122529 (25 bp)
GACAGGGAGACGTTCCTCCGGCTGA
LOC_Os06g43470
OsAffx.5094.1.S1_at--291--7671Chr06:26122472..26122496 (25 bp)
GGGATCAAGCTGTTCTCCTGCCCGA
LOC_Os06g43470
OsAffx.5094.1.S1_at--1034--831Chr06:26122361..26122385 (25 bp)
ATGGAGTTCATGGAGACCATCATCG
LOC_Os06g43470
OsAffx.5094.1.S1_at--1026--3551Chr06:26122344..26122368 (25 bp)
CATCATCGAGGAGCATCAGGCGGCG
LOC_Os06g43470
OsAffx.5094.1.S1_at--658--8091Chr06:26122290..26122314 (25 bp)
GGACCTGGTAGACGTACTCCTAAGA
LOC_Os06g43470
OsAffx.5094.1.S1_at--61--6031Chr06:26122258..26122282 (25 bp)
GAGATGGTAGCCTTCAGTTTTCCCT
LOC_Os06g43470
OsAffx.5094.1.S1_at--583--3331Chr06:26122230..26122254 (25 bp)
CACGGACAACATCAAAGCTGCCATT
LOC_Os06g43470
OsAffx.5094.1.S1_at--662--1591Chr06:26122215..26122239 (25 bp)
AGCTGCCATTGCTGTGAGTTACAAT
LOC_Os06g43470
Target Sequence 
GCGAGTGTCGTCAACCTGAGCAGGATGATATCGTCGTGCGTCGCCGACTCGTCGGTGCGCGCCATCATCGGAAGCGGCCG
GTTCAAGGACAGGGAGACGTTCCTCCGGCTGATGGAGCGAGGGATCAAGCTGTTCTCCTGCCCGAGCTTGCCGGACCTCT
TCCCGTCGTCGCGGCTGGCCATGCTCGTCAGCCGAGTTCCTGGCCGCATGAGGCGGCAGAGGAAGGAGATGATGGAGTTC
ATGGAGACCATCATCGAGGAGCATCAGGCGGCGCGCCAGGCCTCCATGGAGCTCGAGAAAGAGGACCTGGTAGACGTACT
CCTAAGAGTTCAGAGAGATGGTAGCCTTCAGTTTTCCCTCACCACGGACAACATCAAAGCTGCCATTGCTGTGAGTTACA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis