Browse Element(s) Details


OsAffx.5104.1.S1_at

Description tigr:9634.m04302
TID=OsAffx.5104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AA586152 come from this gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4443011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44410OsAffx.28099.1.S1_at11/116+26806864..26812600sensory transduction histidine kinase, putative, expressed
LOC_Os06g44420OsAffx.5103.1.S1_at11/116+26828648..26831191expressed protein
LOC_Os06g44430OsAffx.5104.1.S1_at11/116+26832863..26835087Protein kinase domain containing protein
LOC_Os06g44440NANA6+26837208..26838169hypothetical protein
LOC_Os06g44450Os.7920.1.S1_at11/116+26842124..26843644CONSTANS-like protein CO6, putative, expressed
LOC_Os06g44450OsAffx.8265.1.A1_x_at1/116+26842124..26843644CONSTANS-like protein CO6, putative, expressed
LOC_Os06g44460Os.24909.1.A1_s_at11/116+26853891..26857581D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os06g44470Os.7428.1.S1_at11/116+26858074..26858738Pollen allergen family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5104.1.S1_at--602--7171Chr06:26834593..26834617 (25 bp)
GTCTCCGGCAGGAAGCCCATCGAGC
LOC_Os06g44430
OsAffx.5104.1.S1_at--154--1771Chr06:26834641..26834665 (25 bp)
ACCGTCACCGAGTGGGCGGAGCCGC
LOC_Os06g44430
OsAffx.5104.1.S1_at--821--6311Chr06:26834850..26834874 (25 bp)
GATGAAGAGCATCAAGTACGCGGAT
LOC_Os06g44430
OsAffx.5104.1.S1_at--250--5931Chr06:26834856..26834880 (25 bp)
GAGCATCAAGTACGCGGATCACCTC
LOC_Os06g44430
OsAffx.5104.1.S1_at--785--2831Chr06:26834863..26834887 (25 bp)
AAGTACGCGGATCACCTCATGGAGA
LOC_Os06g44430
OsAffx.5104.1.S1_at--863--1831Chr06:26834867..26834891 (25 bp)
ACGCGGATCACCTCATGGAGATGGA
LOC_Os06g44430
OsAffx.5104.1.S1_at--651--2211Chr06:26834891..26834915 (25 bp)
ACAAGAGCAGCGTGTACTACGGCGA
LOC_Os06g44430
OsAffx.5104.1.S1_at--113--991Chr06:26834963..26834987 (25 bp)
AGGAGTACTCGCTGATGGAGGACAA
LOC_Os06g44430
OsAffx.5104.1.S1_at--966--6991Chr06:26834967..26834991 (25 bp)
GTACTCGCTGATGGAGGACAAGAGC
LOC_Os06g44430
OsAffx.5104.1.S1_at--1134--591Chr06:26835019..26835043 (25 bp)
ATGCCGGTGCAGACCATGCACGATC
LOC_Os06g44430
OsAffx.5104.1.S1_at--213--3511Chr06:26835033..26835057 (25 bp)
CATGCACGATCCCTACGTCAGGAGG
LOC_Os06g44430
Target Sequence 
GTCTCCGGCAGGAAGCCCATCGAGCGCCTCCCCTCGGGGGCCAAGCGCACCGTCACCGAGTGGGCGGAGCCGCTCATCGC
CCGCGGCCGCCTCGCGGACCTCGTCGACCCGCGCCTCCGCGGCGCGTTCGACGCCGCGCAGCTCGCCCGCGCCGTCGAGG
CCGCCGCGCTCTGCGTCCAGGCCGAGCCCGAGCGCCGCCCCGACATGCGCGCCGTCGTCCGCATCCTCCGCGGCGACGCC
GACGCCAAGCCGGTGAGGATGAAGAGCATCAAGTACGCGGATCACCTCATGGAGATGGACAAGAGCAGCGTGTACTACGG
CGAGGACGGCGGCGGCGACGGCGAGGAAGACATGGACGACGAGGAGGTGGAGGAGTACTCGCTGATGGAGGACAAGAGCA
GCGTGAACTTCGGGGTGTTCGGCGCCATGCCGGTGCAGACCATGCACGATCCCTACGTCAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis