Browse Element(s) Details


OsAffx.5177.1.S1_at

Description tigr:9635.m00087
TID=OsAffx.5177.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g018508/11NLI interacting factor-like phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01830OsAffx.16036.1.S1_x_at9/117+489913..490657hypothetical protein
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5177.1.S1_at--935--9271Chr07:508253..508462 (25 bp)
TCCCTATTATTCTGTTGGGTCCTAA
LOC_Os07g01850
OsAffx.5177.1.S1_at--266--6631Chr07:508455..508475 (21 bp)
GTTGGGTCCTAATGCACACACTATA
LOC_Os07g01850
OsAffx.5177.1.S1_at--996--7211Chr07:508490..508514 (25 bp)
GTCGAAATGCACTGGTACTGGGTTT
LOC_Os07g01850
OsAffx.5177.1.S1_at--894--7971Chr07:508580..508604 (25 bp)
GGATCCTGATCTTCCATGGGAGCAA
LOC_Os07g01850
OsAffx.5177.1.S1_at--121--731Chr07:508639..508663 (25 bp)
ATGATTCCCCTTACAAGGCTCTGGG
LOC_Os07g01850
OsAffx.5177.1.S1_at--414--7751Chr07:508904..508927 (24 bp)
GGTGTTGATGCCAATTTTCCATGAG
LOC_Os07g01850
OsAffx.5177.1.S1_at--107--6911Chr07:508953..508977 (25 bp)
GTATCTGGAGAACCTTGCTACTGCA
LOC_Os07g01850
OsAffx.5177.1.S1_at--33--1651Chr07:508988..509012 (25 bp)
AGCGCTATGTACAGGAGCACCCATT
LOC_Os07g01850
OsAffx.5177.1.S1_at--927--3591Chr07:509942..509961 (20 bp)
CATTCGCTGTTTGGCCTTGGATGGA
NONE
OsAffx.5177.1.S1_at--27--5051Chr07:510096..510120 (25 bp)
GCAGAGTCACGAGGTGCTTGCTCAA
NONE
OsAffx.5177.1.S1_at--568--7471Chr07:510135..510159 (25 bp)
GTGTGTGTGGTCACAGCCGCTGTAC
NONE
Target Sequence 
TCCCTATTATTCTGTTGGGTCCTAATGCACACACTATAATTTGCCAGGACATGTCGAAATGCACTGGTACTGGGTTTAAA
ACTCTTGAAAACAAAAACAAACCATTAGTACTGAAGGAGCTAAAGAAACTGTGGAATAAAGAGGATCCTGATCTTCCATG
GGAGCAAGAAGAGTTTTCACCTTCAAATACATTACTTGTGGATGATTCCCCTTACAAGGCTCTGGGCAATCCGCCACACA
CTGCCATTTTTCCTCACCCCTACAGCTATCTTAACAAGAAAGATGATTCATTGGTGTTGATGCCAATTTTCCATGAGCAG
GACCAGGTGGAGATCTTCGGGTGTATCTGGAGAACCTTGCTACTGCAGATGATGTTCAGCGCTATGTACAGGAGCACCCA
TTCGCTGTTTGGCCTTGGATGGATGGAGCAAGAACCCATAATTGAAGACAGGAAGGTTGCAGAGTCACGAGGTGCTTGCT
CAAGGTGCAGTGTGTCTGTGTGTGTGGTCACAGCCGCTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis