Browse Element(s) Details


OsAffx.5250.1.S1_at

Description tigr:9635.m00758
TID=OsAffx.5250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0810011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein
LOC_Os07g08100OsAffx.5250.1.S1_at11/117+4104836..4105876hypothetical protein
LOC_Os07g08120Os.15264.1.S1_at11/117+4116736..4121887ETO1-like protein 1, putative, expressed
LOC_Os07g08129NANA7+4123125..4123649NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5250.1.S1_at--541--5731Chr07:4104941..4104965 (25 bp)
GACGGCCGAGCTCCACGAACAAGCA
LOC_Os07g08100
OsAffx.5250.1.S1_at--390--1951Chr07:4104940..4104964 (25 bp)
ACGGCCGAGCTCCACGAACAAGCAG
LOC_Os07g08100
OsAffx.5250.1.S1_at--951--8411Chr07:4104938..4104962 (25 bp)
GGCCGAGCTCCACGAACAAGCAGCT
LOC_Os07g08100
OsAffx.5250.1.S1_at--1022--5891Chr07:4104934..4104958 (25 bp)
GAGCTCCACGAACAAGCAGCTACGG
LOC_Os07g08100
OsAffx.5250.1.S1_at--130--4791Chr07:4104932..4104956 (25 bp)
GCTCCACGAACAAGCAGCTACGGAC
LOC_Os07g08100
OsAffx.5250.1.S1_at--295--9211Chr07:4104930..4104954 (25 bp)
TCCACGAACAAGCAGCTACGGACGG
LOC_Os07g08100
OsAffx.5250.1.S1_at--506--3331Chr07:4104928..4104952 (25 bp)
CACGAACAAGCAGCTACGGACGGCG
LOC_Os07g08100
OsAffx.5250.1.S1_at--1094--4091Chr07:4104926..4104950 (25 bp)
CGAACAAGCAGCTACGGACGGCGGC
LOC_Os07g08100
OsAffx.5250.1.S1_at--450--4271Chr07:4104891..4104915 (25 bp)
CCTCCGGCGAGGTAGCGGGATTGGC
LOC_Os07g08100
OsAffx.5250.1.S1_at--193--4071Chr07:4104884..4104908 (25 bp)
CGAGGTAGCGGGATTGGCGGATCCG
LOC_Os07g08100
OsAffx.5250.1.S1_at--636--7951Chr07:4104866..4104890 (25 bp)
GGATCCGGGTAAGGCCTTGTTCGAT
LOC_Os07g08100
Target Sequence 
GACGGCCGAGCTCCACGAACAAGCAGCTACGGACGGCGGCGGCAGCGCCTCCTCCGGCGAGGTAGCGGGATTGGCGGATC
CGGGTAAGGCCTTGTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis