Browse Element(s) Details


OsAffx.5278.1.S1_at

Description tigr:9635.m00981
TID=OsAffx.5278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1017010/11hypothetical protein
LOC_Os11g058401/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10140NANA7+5448232..5448630hypothetical protein
LOC_Os07g10150Os.7984.1.S1_at11/117+5450473..5457849Coatomer gamma subunit, putative, expressed
LOC_Os07g10160OsAffx.28378.1.S1_at11/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10160Os.51134.2.S1_x_at1/117+5461419..5463097UDP-rhamnose:rhamnosyltransferase, putative
LOC_Os07g10170OsAffx.5278.1.S1_at10/117+5471891..5473233hypothetical protein
LOC_Os07g10180OsAffx.16189.1.S1_at11/117+5476478..5477071hypothetical protein
LOC_Os07g10190Os.51134.1.S1_at11/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10190Os.51134.2.S1_x_at2/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10200OsAffx.28377.1.S1_at11/117+5483651..5484775hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_x_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10220Os.51134.2.S1_x_at2/117+5489010..5489558glycosyltransferase family protein, putative
LOC_Os07g10230OsAffx.28379.1.S1_at11/117+5490306..5491157hydroquinone glucosyltransferase, putative, expressed
LOC_Os07g10240NANA7+5495790..5497289UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5278.1.S1_at--619--9411Chr07:5471927..5471951 (25 bp)
TCGTCGCCCAGCTACCGTGTGAGGG
LOC_Os07g10170
OsAffx.5278.1.S1_at--637--3391Chr07:5471935..5471959 (25 bp)
CAGCTACCGTGTGAGGGCGCGCGAG
LOC_Os07g10170
OsAffx.5278.1.S1_at--999--4671NONE
GCGGATCCAGACGAGGTTAGCAGCC
NONE
OsAffx.5278.1.S1_at--478--1391Chr07:5472922..5472941 (20 bp)
AGACGAGGTTAGCAGCCGCACAACT
LOC_Os07g10170
OsAffx.5278.1.S1_at--1066--10011Chr07:5472926..5472950 (25 bp)
TAGCAGCCGCACAACTCACGGTCGG
LOC_Os07g10170
OsAffx.5278.1.S1_at--131--1931Chr07:5472970..5472994 (25 bp)
ACGGCTCAGCTCACGGCCGGGAAAG
LOC_Os07g10170
OsAffx.5278.1.S1_at--2--1811Chr07:5473047..5473071 (25 bp)
ACCCGACGCACAGCGCGATGGCAAG
LOC_Os07g10170
OsAffx.5278.1.S1_at--670--4691Chr07:5473071..5473095 (25 bp)
GCGGCGGCACCGAGCACATGAGCAC
LOC_Os07g10170
OsAffx.5278.1.S1_at--1123--4691Chr07:5473100..5473124 (25 bp)
GCGGCGGAGCAATGTCGATAAAATC
LOC_Os07g10170
OsAffx.5278.1.S1_at--244--3891Chr07:5473115..5473139 (25 bp)
CGATAAAATCGGGACTAAGTTTGCA
LOC_Os07g10170
OsAffx.5278.1.S1_at--793--3732Chr07:5473129..5473153 (25 bp)
CTAAGTTTGCAGACTGTAACTGAAG
LOC_Os07g10170
Target Sequence 
TCGTCGCCCAGCTACCGTGTGAGGGCGCGCGAGGCCGCCTCCACCGCCCGGCCGCGCGAGTCCGCCTCCACGGCCGCCCG
GCCGCCGCCGCCTGAGAAGTGGGGAGGAGAGGGGAGGGGGCGGATCCAGACGAGGTTAGCAGCCGCACAACTCACGGTCG
GCGCGACGGCCCGAGCCGGGACGGCTCAGCTCACGGCCGGGAAAGCGGCGGCGCCCCGCCGGGGACCCACCGCCAACGAC
GACAAGGCGCAGCGGCCACCCGACGCACAGCGCGATGGCAAGCGGCGGCACCGAGCACATGAGCACGGCGGCGGCGGAGC
AATGTCGATAAAATCGGGACTAAGTTTGCAGACTGTAACTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis