Browse Element(s) Details


OsAffx.5279.1.S1_at

Description tigr:9635.m01002
TID=OsAffx.5279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to pre-rRNA processing protein RRP5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1035011/11S1 RNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10310OsAffx.28381.1.S1_at11/117+5526553..5527383hypothetical protein
LOC_Os07g10310OsAffx.28385.2.S1_x_at1/117+5526553..5527383hypothetical protein
LOC_Os07g10320OsAffx.28382.1.S1_at11/117+5528953..5529402hypothetical protein
LOC_Os07g10330OsAffx.28385.2.S1_x_at3/117+5533026..5533661hypothetical protein
LOC_Os07g10340OsAffx.28384.1.S1_at11/117+5535262..5535480hypothetical protein
LOC_Os07g10350OsAffx.5279.1.S1_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350OsAffx.5279.1.S1_x_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350Os.48189.1.S1_at9/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10360OsAffx.28385.2.S1_x_at1/117+5557080..5557649hypothetical protein
LOC_Os07g10370OsAffx.28385.2.S1_x_at11/117+5563788..5564315hypothetical protein
LOC_Os07g10380OsAffx.28386.1.S1_at11/117+5564976..5565440hypothetical protein
LOC_Os07g10390Os.18616.1.S1_at11/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10390OsAffx.12779.1.S1_at1/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5279.1.S1_at--512--5351Chr07:5554572..5554594 (23 bp)
GAAGATATATTTGATTCCTAGAAAA
LOC_Os07g10350
OsAffx.5279.1.S1_at--568--6571Chr07:5554582..5554606 (25 bp)
GATTCCTAGAAAAATACAGTTTGTT
LOC_Os07g10350
OsAffx.5279.1.S1_at--161--2271Chr07:5554593..5554617 (25 bp)
AAATACAGTTTGTTTCTGAGAAATG
LOC_Os07g10350
OsAffx.5279.1.S1_at--707--8891Chr07:5554609..5554633 (25 bp)
TGAGAAATGTAATCCAGAGCTGAGT
LOC_Os07g10350
OsAffx.5279.1.S1_at--773--1371Chr07:5554624..5554923 (25 bp)
AGAGCTGAGTGATTCCTCATACTAT
LOC_Os07g10350
OsAffx.5279.1.S1_at--1071--6111Chr07:5554909..5554929 (21 bp)
GAGTGATTCCTCATACTATGCTCAA
LOC_Os07g10350
OsAffx.5279.1.S1_at--1008--6571Chr07:5554909..5554933 (25 bp)
GATTCCTCATACTATGCTCAACTTC
LOC_Os07g10350
OsAffx.5279.1.S1_at--441--331Chr07:5554917..5554941 (25 bp)
ATACTATGCTCAACTTCCGCAGTTT
LOC_Os07g10350
OsAffx.5279.1.S1_at--847--10111Chr07:5554921..5554945 (25 bp)
TATGCTCAACTTCCGCAGTTTTTAT
LOC_Os07g10350
OsAffx.5279.1.S1_at--646--4831Chr07:5554924..5554948 (25 bp)
GCTCAACTTCCGCAGTTTTTATTCA
LOC_Os07g10350
OsAffx.5279.1.S1_at--794--9691Chr07:5554926..5554950 (25 bp)
TCAACTTCCGCAGTTTTTATTCAAG
LOC_Os07g10350
Target Sequence 
GAAGATATATTTGATTCCTAGAAAAATACAGTTTGTTTCTGAGAAATGTAATCCAGAGCTGAGTGATTCCTCATACTATG
CTCAACTTCCGCAGTTTTTATTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis