Browse Element(s) Details


OsAffx.5281.1.S1_at

Description tigr:9635.m01008
TID=OsAffx.5281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain containing protein RAP2.11, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1041011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10390Os.18616.1.S1_at11/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10390OsAffx.12779.1.S1_at1/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10400OsAffx.5280.1.S1_at11/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10400Os.14644.2.S1_x_at5/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein
LOC_Os07g10430OsAffx.5282.1.S1_at11/117+5607013..5607330hypothetical protein
LOC_Os07g10440OsAffx.5283.1.S1_at5/117+5610538..5610913expressed protein
LOC_Os07g10460Os.15242.1.S1_at11/117+5612114..5622021acid phosphatase SurE family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5281.1.S1_at--737--9671Chr07:5592592..5592616 (25 bp)
TCACCTTCAGCACCGCAGTATATCA
LOC_Os07g10410
OsAffx.5281.1.S1_at--104--3451Chr07:5592607..5592631 (25 bp)
CAGTATATCACCATGCTCGTAGCAC
LOC_Os07g10410
OsAffx.5281.1.S1_at--982--1711Chr07:5592660..5592684 (25 bp)
ACCAGTGGTGTCAGCCCCAGCAGAA
LOC_Os07g10410
OsAffx.5281.1.S1_at--28--2151Chr07:5592688..5592712 (25 bp)
ACAGCTCAAGCCTTAATTTTGCTAC
LOC_Os07g10410
OsAffx.5281.1.S1_at--581--171Chr07:5592703..5592727 (25 bp)
ATTTTGCTACAAACCTCTCTAATTT
LOC_Os07g10410
OsAffx.5281.1.S1_at--632--4711Chr07:5592755..5592779 (25 bp)
GCTGGCTTCTTCACAACAACAATAT
LOC_Os07g10410
OsAffx.5281.1.S1_at--1105--711Chr07:5592778..5592802 (25 bp)
ATGATCAGTCATGGGCACTCAACAC
LOC_Os07g10410
OsAffx.5281.1.S1_at--274--9151Chr07:5592828..5592852 (25 bp)
TGCGACATGTCAGGCAGCAATGCTT
LOC_Os07g10410
OsAffx.5281.1.S1_at--483--4551Chr07:5592853..5592877 (25 bp)
GCCCAGTGGCCTCAGACCAGGATAA
LOC_Os07g10410
OsAffx.5281.1.S1_at--531--1451Chr07:5592889..5592913 (25 bp)
AGAAGCAAGGCTCCCATGGTATGAA
LOC_Os07g10410
OsAffx.5281.1.S1_at--238--8631Chr07:5592943..5592967 (25 bp)
TGGGTAATGATCTGTGCGACTCCTT
LOC_Os07g10410
Target Sequence 
TCACCTTCAGCACCGCAGTATATCACCATGCTCGTAGCACTGTCCCTGCTGCTGCAACCAGCACAAGCACCAGTGGTGTC
AGCCCCAGCAGAAGCAACAGCTCAAGCCTTAATTTTGCTACAAACCTCTCTAATTTTGCTATGAGTGGAGGTGAAGAATT
GCAGCTGGCTTCTTCACAACAACAATATGATCAGTCATGGGCACTCAACACCAGCCTACTACCGATTGGGGATGGATGCG
ACATGTCAGGCAGCAATGCTTGCCCAGTGGCCTCAGACCAGGATAAGATGAAGGCAGAGAAGCAAGGCTCCCATGGTATG
AATGGCATCCAGGAGCAGGAAACCTTTGATATGGGTAATGATCTGTGCGACTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis