Browse Element(s) Details


OsAffx.5335.3.S1_x_at

Description tigr:9630.m05069
TID=OsAffx.5335.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5158011/11hypothetical protein
LOC_Os07g149201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51540Os.6133.1.S2_at11/112+31558927..31566094Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g51540Os.6133.1.S1_at11/112+31558927..31566094Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g51550OsAffx.24826.1.S1_at11/112+31570121..31571386expressed protein
LOC_Os02g51560OsAffx.12595.1.S1_at11/112+31573715..31574042hypothetical protein
LOC_Os02g51570Os.11397.1.S1_at11/112+31585352..31587279peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g51580OsAffx.5335.3.S1_x_at11/112+31588693..31589257hypothetical protein
LOC_Os02g51590Os.16735.1.S1_at11/112+31591762..315947662,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed
LOC_Os02g51600Os.53144.1.S1_at11/112+31595497..31598522Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g51610Os.6076.1.S1_at11/112+31598643..31602284CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g51620Os.38849.1.S1_at11/112+31603932..31608300Glycosyl hydrolase family 3 C terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5335.3.S1_x_at--797--971Chr02:31589202..31589226 (25 bp)
AGGAGCTCGTTGTGCTGCCGCCCAG
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--262--4711Chr02:31589137..31589161 (25 bp)
GCGGCGATTGGCTTCGACCGCATGG
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--948--4991Chr02:31589087..31589142 (25 bp)
GCATGGCGGAACAGTCCCACAACGA
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--1106--2472Chr07:8537695..8537716 (22 bp)
AACAGTCCCACAACGATCCGCCGGT
LOC_Os07g14920
OsAffx.5335.3.S1_x_at--1135--1271Chr02:31589036..31589060 (25 bp)
AGATCTTCACGCTCGACACAGGTGC
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--63--1851Chr02:31589028..31589052 (25 bp)
ACGCTCGACACAGGTGCCGGCGATG
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--181--8011Chr02:31589004..31589028 (25 bp)
GGATGGCAGCGCATGCAAGACCAGT
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--1066--9011Chr02:31588991..31589015 (25 bp)
TGCAAGACCAGTCGCGTGCCATCAG
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--99--7491Chr02:31588934..31588958 (25 bp)
GTGGGGGTTTCTTCTACTGGTTCAT
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--707--1691Chr02:31588898..31588922 (25 bp)
AGCCATGCGCGCTGTTGTGGTTCAG
LOC_Os02g51580
OsAffx.5335.3.S1_x_at--609--8331Chr02:31588833..31588857 (25 bp)
GGCTGCACGGCCTGCGACAACAACG
LOC_Os02g51580
Target Sequence 
AGGAGCTCGTTGTGCTGCCGCCCAGCAGTGGCAGCGGCCCATGCCCACGGTCTACAGAATCAACGGCGGCGATTGGCTTC
GACCGCATGGCGGAACAGTCCCACAACGATCCGCCGGTCTACAACATCGGACACGAGATCTTCACGCTCGACACAGGTGC
CGGCGATGGATGGCAGCGCATGCAAGACCAGTCGCGTGCCATCAGTCCCGGCGGGAGGAGACCCGCTGCCTGCACGCGTG
GGGGTTTCTTCTACTGGTTCATCAACGACTCTCAGCCATGCGCGCTGTTGTGGTTCAGCCTGCGAGACGAGGCGTTCGAC
GCGGTCCCGTCCTCTCTGGGCTGCACGGCCTGCGACAACAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5335.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis