Browse Element(s) Details


OsAffx.5347.1.S1_at

Description tigr:9635.m01619
TID=OsAffx.5347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to zwillepinhead-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1622411/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16190Os.45902.1.A1_x_at4/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16190OsAffx.10222.1.S1_x_at2/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16190Os.56372.1.S1_at1/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16210OsAffx.16290.2.A1_at11/117+9453245..9454848hypothetical protein
LOC_Os07g16210OsAffx.30582.1.S1_s_at4/117+9453245..9454848hypothetical protein
LOC_Os07g16224OsAffx.5347.1.S1_at11/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16224Os.19635.1.S1_at10/117+9458856..9466413Piwi domain containing protein, expressed
LOC_Os07g16240NANA7+9473500..9477231retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16250OsAffx.16291.1.S1_at11/117+9484464..9485045hypothetical protein
LOC_Os07g16260OsAffx.16292.1.S1_at11/117+9488743..9489156hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5347.1.S1_at--863--8211Chr07:9460039..9460063 (25 bp)
GGAATTTCGCAATGCAGGCATATCA
LOC_Os07g16224
OsAffx.5347.1.S1_at--954--2551Chr07:9459923..9459947 (25 bp)
AACGTTCCTCCAGGTGCAGTTCTGT
LOC_Os07g16224
OsAffx.5347.1.S1_at--95--1051Chr07:9459912..9459936 (25 bp)
AGGTGCAGTTCTGTCCTGTTTTAAT
LOC_Os07g16224
OsAffx.5347.1.S1_at--1133--6711Chr07:9459905..9459929 (25 bp)
GTTCTGTCCTGTTTTAATACATCTG
LOC_Os07g16224
OsAffx.5347.1.S1_at--838--7251Chr07:9459900..9459924 (25 bp)
GTCCTGTTTTAATACATCTGATCTG
LOC_Os07g16224
OsAffx.5347.1.S1_at--622--331Chr07:9459889..9459913 (25 bp)
ATACATCTGATCTGAGGGCTATTTA
LOC_Os07g16224
OsAffx.5347.1.S1_at--971--2091Chr07:9459887..9459911 (25 bp)
ACATCTGATCTGAGGGCTATTTATT
LOC_Os07g16224
OsAffx.5347.1.S1_at--773--271Chr07:9459854..9459878 (25 bp)
ATAGGTTTTGATGAAGCACTGTCTT
LOC_Os07g16224
OsAffx.5347.1.S1_at--194--8871Chr07:9459846..9459870 (25 bp)
TGATGAAGCACTGTCTTTGCGAACA
LOC_Os07g16224
OsAffx.5347.1.S1_at--210--1511Chr07:9459840..9459864 (25 bp)
AGCACTGTCTTTGCGAACAGGGACT
LOC_Os07g16224
OsAffx.5347.1.S1_at--473--7131Chr07:9459834..9459858 (25 bp)
GTCTTTGCGAACAGGGACTGTTGTA
LOC_Os07g16224
Target Sequence 
GGAATTTCGCAATGCAGGCATATCAATATATGGATCAGGGGCCAATTCCTAAGTTCACAGTGATCATTGCTCAAAAGAAT
CACCACACAAAACTTTTCCAAGAAAATACTCCAGACAACGTTCCTCCAGGTGCAGTTCTGTCCTGTTTTAATACATCTGA
TCTGAGGGCTATTTATTTACCCCCAATAGGTTTTGATGAAGCACTGTCTTTGCGAACAGGGACTGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis