Browse Element(s) Details


OsAffx.5380.1.S1_at

Description tigr:9635.m01976
TID=OsAffx.5380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1957011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19540NANA7+11581148..11581495expressed protein
LOC_Os07g19550Os.27438.2.S1_a_at4/117+11581345..11584125expressed protein
LOC_Os07g19550Os.27438.2.S1_x_at2/117+11581345..11584125expressed protein
LOC_Os07g19560Os.16358.1.S1_at11/117+11590646..11595170Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os07g19570OsAffx.5380.1.S1_at11/117+11596133..11596492hypothetical protein
LOC_Os07g19580NANA7+11597581..11599458retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19590NANA7+11599977..11602270hypothetical protein
LOC_Os07g19594OsAffx.20689.1.A1_x_at1/117+11603236..11610359retrotransposon protein, putative, unclassified
LOC_Os07g20100OsAffx.5382.1.S1_at11/117+11613954..11614678expressed protein
LOC_Os07g20110OsAffx.16339.1.S1_s_at11/117+11617440..11619279expressed protein
LOC_Os07g20120OsAffx.16340.1.S1_at11/117+11621339..11621578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5380.1.S1_at--576--3471Chr07:11596398..11596422 (25 bp)
CAGGTGCTCACCAGTATGCGATGGG
LOC_Os07g19570
OsAffx.5380.1.S1_at--972--2891Chr07:11596342..11596366 (25 bp)
AAGGTGCGGTCGAGCGTCTCCTCGT
LOC_Os07g19570
OsAffx.5380.1.S1_at--872--9131Chr07:11596338..11596362 (25 bp)
TGCGGTCGAGCGTCTCCTCGTCCTT
LOC_Os07g19570
OsAffx.5380.1.S1_at--931--5731Chr07:11596296..11596320 (25 bp)
GACGGCGCACCGCAAGGAGGTCGGA
LOC_Os07g19570
OsAffx.5380.1.S1_at--898--4411Chr07:11596254..11596278 (25 bp)
GCCAGAGGCGACAAACGCGGCAATG
LOC_Os07g19570
OsAffx.5380.1.S1_at--1046--5591Chr07:11596245..11596269 (25 bp)
GACAAACGCGGCAATGGCCTCGGGT
LOC_Os07g19570
OsAffx.5380.1.S1_at--981--2191Chr07:11596244..11596268 (25 bp)
ACAAACGCGGCAATGGCCTCGGGTT
LOC_Os07g19570
OsAffx.5380.1.S1_at--804--7951Chr07:11596175..11596199 (25 bp)
GGATAATAGGATGGAGCACGGCACA
LOC_Os07g19570
OsAffx.5380.1.S1_at--617--271Chr07:11596170..11596194 (25 bp)
ATAGGATGGAGCACGGCACAGCGAT
LOC_Os07g19570
OsAffx.5380.1.S1_at--982--831Chr07:11596165..11596189 (25 bp)
ATGGAGCACGGCACAGCGATGCCAA
LOC_Os07g19570
OsAffx.5380.1.S1_at--286--8071Chr07:11596163..11596187 (25 bp)
GGAGCACGGCACAGCGATGCCAATG
LOC_Os07g19570
Target Sequence 
CAGGTGCTCACCAGTATGCGATGGGGGTCGGGTTCCAACGGCTCCCGGCAGCGAGGAAGGTGCGGTCGAGCGTCTCCTCG
TCCTTGCGGAACCGAAGGAGGCGACGGCGCACCGCAAGGAGGTCGGAAACGGCGGCAAGAGGGGGCCAGAGGCGACAAAC
GCGGCAATGGCCTCGGGTTCGTGGTGGAGGGGTGGTTACGGTGGCGATTTGGGGAAGCAAAACGGATAATAGGATGGAGC
ACGGCACAGCGATGCCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis