Browse Element(s) Details


OsAffx.5392.1.S1_at

Description tigr:9635.m02048
TID=OsAffx.5392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2077010/11hypothetical protein
LOC_Os12g220501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20730Os.54774.1.S1_x_at1/117+11989762..11996904retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20740OsAffx.30405.1.S1_x_at1/117+12002498..12003747hypothetical protein
LOC_Os07g20750NANA7+12004555..12006670hypothetical protein
LOC_Os07g20770OsAffx.5392.1.S1_at10/117+12014361..12016311hypothetical protein
LOC_Os07g20780Os.53142.1.S1_at3/117+12017726..12021641retrotransposon protein, putative, unclassified
LOC_Os07g20780Os.23706.1.A1_x_at1/117+12017726..12021641retrotransposon protein, putative, unclassified
LOC_Os07g20790NANA7+12027005..12027561transposon protein, putative, unclassified
LOC_Os07g20800NANA7+12030301..12030773retrotransposon protein, putative, unclassified
LOC_Os07g20810OsAffx.22947.2.S1_x_at5/117+12033319..12037054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20810OsAffx.22947.1.S1_x_at4/117+12033319..12037054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20810OsAffx.22947.3.S1_x_at3/117+12033319..12037054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20810Os.52609.1.S1_at1/117+12033319..12037054retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5392.1.S1_at--736--1471NONE
AGAATTATCCTGGTGTGGGAATCAT
NONE
OsAffx.5392.1.S1_at--698--4671Chr07:12015351..12015453 (25 bp)
GCGGAACAGATTTTTGGCTCAGGAT
LOC_Os07g20770
OsAffx.5392.1.S1_at--676--1331Chr07:12015458..12015482 (25 bp)
AGAGTTTGGCTCACCATGCTCAAAA
LOC_Os07g20770
OsAffx.5392.1.S1_at--232--9631Chr07:12015540..12015564 (25 bp)
TCATGTATATCCTTACGCCTCTGAG
LOC_Os07g20770
OsAffx.5392.1.S1_at--225--10471Chr07:12015552..12015576 (25 bp)
TTACGCCTCTGAGTCCGAGGAAGAT
LOC_Os07g20770
OsAffx.5392.1.S1_at--797--8571Chr07:12016065..12016089 (25 bp)
TGGTTTTGATCTGCATTGGGACTGC
LOC_Os07g20770
OsAffx.5392.1.S1_at--1156--3591Chr07:12016130..12016154 (25 bp)
CATTGATAGAAGATCGGCTGGGTCA
LOC_Os07g20770
OsAffx.5392.1.S1_at--351--2311Chr07:12016157..12016181 (25 bp)
AAAGGTTGCCTATTCATCAGAGATT
LOC_Os07g20770
OsAffx.5392.1.S1_at--764--6051Chr07:12016176..12016200 (25 bp)
GAGATTGGGCTCAGTACACCAGGAT
LOC_Os07g20770
OsAffx.5392.1.S1_at--1152--2152Chr12:12408419..12408439 (21 bp)
ACACCAGGATCACCTTCAGGACGAA
LOC_Os12g22050
OsAffx.5392.1.S1_at--53--3531Chr07:12016224..12016248 (25 bp)
CATGAATTCGCAATGGTGCCCTTCT
LOC_Os07g20770
Target Sequence 
AGAATTATCCTGGTGTGGGAATCATGAGATGAAGATATCTGATTTAACAGCAGTTAAGCAAAGACATGATGAAATTGTAC
AAGATTACATTCTAAGATTCAGGGATATGCGGAACAGATTTTTGGCTCAGGATTTTGAGAGTTTGGCTCACCATGCTCAA
AAGGTAACATTGCATGAGCAAAGGTTTGCAGAAGCTAAGAAGAACTCCAAGAAGGTTAATCATGTATATCCTTACGCCTC
TGAGTCCGAGGAAGATGATGATTCCAAAGTAGCAGCAGCCGAATGGGCAAGGAACAAGAAGTATCAAAGGAGGCATGACA
AGCAGGAGGAAAGATATTTTGAAGATGATGGTGGTTTTGATCTGCATTGGGACTGCAAGTTTTTCAGGTTTTGTTGGAAT
GAAGGGATGAGATTGCCATTGATAGAAGATCGGCTGGGTCAGAAAAGGTTGCCTATTCATCAGAGATTGGGCTCAGTACA
CCAGGATCACCTTCAGGACGAAGATGAAGACATGAATTCGCAATGGTGCCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis