Browse Element(s) Details


OsAffx.5482.1.S1_at

Description tigr:9635.m02923
TID=OsAffx.5482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2997011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29940OsAffx.5481.1.S1_at11/117+17625538..17627019hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_x_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29950OsAffx.28666.1.S1_at11/117+17633468..17634329hypothetical protein
LOC_Os07g29960OsAffx.28116.1.S1_s_at1/117+17639029..17641558Cytochrome P450 family protein, expressed
LOC_Os07g29970OsAffx.5482.1.S1_at11/117+17651310..17651802hypothetical protein
LOC_Os07g29980NANA7+17655051..17658355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29990Os.47463.1.S1_x_at6/117+17661066..17666056transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29990Os.14491.2.S1_x_at5/117+17661066..17666056transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30000NANA7+17668579..17672801retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5482.1.S1_at--163--7791Chr07:17651555..17651579 (25 bp)
GGTGCGCTAAGGTAGACGGCTATAT
LOC_Os07g29970
OsAffx.5482.1.S1_at--227--5751Chr07:17651569..17651593 (25 bp)
GACGGCTATATCAGCCACCAGAGAA
LOC_Os07g29970
OsAffx.5482.1.S1_at--430--1711Chr07:17651585..17651609 (25 bp)
ACCAGAGAAACTTGAAATCGATCAT
LOC_Os07g29970
OsAffx.5482.1.S1_at--934--2271Chr07:17651599..17651623 (25 bp)
AAATCGATCATGTACTTTCCGCACT
LOC_Os07g29970
OsAffx.5482.1.S1_at--152--411Chr07:17651605..17651629 (25 bp)
ATCATGTACTTTCCGCACTGGCTGC
LOC_Os07g29970
OsAffx.5482.1.S1_at--871--6991Chr07:17651610..17651631 (22 bp)
GTACTTTCCGCACTGGCTGCCGATG
LOC_Os07g29970
OsAffx.5482.1.S1_at--925--9171Chr07:17651709..17651729 (21 bp)
TGCCGATGCGCTTCCCGATGAACTA
LOC_Os07g29970
OsAffx.5482.1.S1_at--980--4051Chr07:17651720..17651744 (25 bp)
CGATGAACTACTTCGGTCTAGCCAT
LOC_Os07g29970
OsAffx.5482.1.S1_at--107--2431Chr07:17651725..17651749 (25 bp)
AACTACTTCGGTCTAGCCATCCTTG
LOC_Os07g29970
OsAffx.5482.1.S1_at--834--7811Chr07:17651734..17651758 (25 bp)
GGTCTAGCCATCCTTGCACTCTTTG
LOC_Os07g29970
OsAffx.5482.1.S1_at--548--3631Chr07:17651746..17651770 (25 bp)
CTTGCACTCTTTGCCGATCCAGATG
LOC_Os07g29970
Target Sequence 
GGTGCGCTAAGGTAGACGGCTATATCAGCCACCAGAGAAACTTGAAATCGATCATGTACTTTCCGCACTGGCTGCCGATG
CGCTTCCCGATGAACTACTTCGGTCTAGCCATCCTTGCACTCTTTGCCGATCCAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis