Browse Element(s) Details


OsAffx.5485.1.S1_at

Description tigr:9635.m02993
TID=OsAffx.5485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=X99923 male sterility 2-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3060011/11Male sterility protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30570NANA7+18087573..18090393retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30580Os.10703.2.S1_x_at1/117+18090814..18096924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30590OsAffx.28683.1.S1_at10/117+18101049..18101918Protease inhibitor/seed storage/LTP family protein
LOC_Os07g30600OsAffx.5485.1.S1_at11/117+18104531..18109557Male sterility protein
LOC_Os07g30610Os.51026.1.S1_x_at1/117+18112018..18113466UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30620Os.51026.1.S1_x_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30620Os.51026.1.S1_at11/117+18122857..18124650UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g30630OsAffx.30032.3.S1_at11/117+18127077..18127925hypothetical protein
LOC_Os07g30630OsAffx.30032.1.S1_at2/117+18127077..18127925hypothetical protein
LOC_Os07g30640OsAffx.5486.1.S1_at9/117+18131662..18133654ubiquitin fusion protein, putative, expressed
LOC_Os07g30640Os.16404.1.S1_at1/117+18131662..18133654ubiquitin fusion protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5485.1.S1_at--291--91Chr07:18107212..18107236 (25 bp)
ATTCCACATTTCATCGGTGCTGGTC
LOC_Os07g30600
OsAffx.5485.1.S1_at--99--7311Chr07:18107228..18107252 (25 bp)
GTGCTGGTCATGTCATCCTTGATGT
LOC_Os07g30600
OsAffx.5485.1.S1_at--327--6031Chr07:18108014..18108038 (25 bp)
GAGAGGCCAAGTTATCATCCATGTG
LOC_Os07g30600
OsAffx.5485.1.S1_at--663--4331Chr07:18108073..18108097 (25 bp)
CCATGCTGGACTTGATGTATCGCTA
LOC_Os07g30600
OsAffx.5485.1.S1_at--259--6911Chr07:18108089..18108113 (25 bp)
GTATCGCTATTTTACTGCTAATCCA
LOC_Os07g30600
OsAffx.5485.1.S1_at--920--1011Chr07:18108176..18108200 (25 bp)
AGGTTTCCGAGCATACATGTTTCTT
LOC_Os07g30600
OsAffx.5485.1.S1_at--1010--6151Chr07:18108729..18108752 (24 bp)
GAGGTTCTGCATTTGGTGAATCCAC
LOC_Os07g30600
OsAffx.5485.1.S1_at--843--6511Chr07:18108804..18108828 (25 bp)
GATATTTCGTTCTTCTGGCCAAGTT
LOC_Os07g30600
OsAffx.5485.1.S1_at--534--8231Chr07:18109416..18109440 (25 bp)
GGCAAGACTGCAGACGGCGACAACT
LOC_Os07g30600
OsAffx.5485.1.S1_at--1157--4471Chr07:18109459..18109483 (25 bp)
GCCTGTGTGCTTAATTTTGATCCCA
LOC_Os07g30600
OsAffx.5485.1.S1_at--365--171Chr07:18109472..18109496 (25 bp)
ATTTTGATCCCAAGTCCATTGACTG
LOC_Os07g30600
Target Sequence 
ATTCCACATTTCATCGGTGCTGGTCATGTCATCCTTGATGTGATTCCCGGTGATATGGTGGTGAATGCGATGTTGGTAGC
CATGGCCGTTCACTGGAGTGAGAGAGGCCAAGTTATCATCCATGTGACATCATCCCAGCAGAACCCGTTGTCAACCTCTA
CCATGCTGGACTTGATGTATCGCTATTTTACTGCTAATCCACAGACAATGGGAAAGAACGGAAAAGTCGTCAAAACCAAA
AGGCTCAACATTACCAATAAAACAGGTTTCCGAGCATACATGTTTCTTAAATACAAGCTACCTTTAGAGGTTCTGCATTT
GGTGAATCCACTATTGGGTGGATATTTTTCTCAGTATTACAATAAATCCATAAGAAGCTACAGATATTTCGTTCTTCTGG
CCAAGTTATACATGCCATATGCTTTCTTCAACGCCTGCTTCAATGGCACAAACTTGGCAAGACTGCAGACGGCGACAACT
CAAGACCAGAGCAAAGAAGCCTGTGTGCTTAATTTTGATCCCAAGTCCATTGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis