Browse Element(s) Details


OsAffx.5526.1.S1_at

Description tigr:9635.m03388
TID=OsAffx.5526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3432011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34300NANA7+20544417..20546997retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g34310Os.35344.3.S1_x_at11/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34310OsAffx.22940.5.S1_at11/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34310Os.35344.18.S1_x_at10/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34310OsAffx.22940.5.S1_x_at10/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34310OsAffx.22940.2.S1_at9/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34310OsAffx.22940.1.S1_s_at9/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34310OsAffx.22940.3.S1_x_at7/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34310OsAffx.22940.2.S1_s_at7/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34310OsAffx.31552.2.S1_at1/117+20549899..20557451Transposable element protein, putative, MuDR
LOC_Os07g34320OsAffx.5526.1.S1_at11/117+20560788..20565965Integral membrane protein DUF6 containing protein, expressed
LOC_Os07g34330NANA7+20569585..20569866hypothetical protein
LOC_Os07g34340OsAffx.28741.1.S1_at11/117+20582492..20585296hypothetical protein
LOC_Os07g34350NANA7+20586355..20587018hypothetical protein
LOC_Os07g34360OsAffx.28742.1.S1_at11/117+20588380..20589410hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5526.1.S1_at--333--7551Chr07:20564405..20564646 (25 bp)
GGGCCGTATTTTTGCTGGGACTCTA
LOC_Os07g34320
OsAffx.5526.1.S1_at--142--8131Chr07:20564639..20564663 (25 bp)
GGACTCTACTGATAGGAGGCCTCTA
LOC_Os07g34320
OsAffx.5526.1.S1_at--255--2291Chr07:20564759..20564783 (25 bp)
AAATGCCTGGTGATGCTGGAACAAA
LOC_Os07g34320
OsAffx.5526.1.S1_at--694--2331Chr07:20565372..20565396 (25 bp)
AAAGATTCTGACATTTCGCTCGCAC
LOC_Os07g34320
OsAffx.5526.1.S1_at--906--10071Chr07:20565406..20565430 (25 bp)
TAGGCCACCAAGATTATCACCGATT
LOC_Os07g34320
OsAffx.5526.1.S1_at--805--6511Chr07:20565427..20565451 (25 bp)
GATTTAAGAGCCTTCCGTGGCACAT
LOC_Os07g34320
OsAffx.5526.1.S1_at--821--3291Chr07:20565553..20565577 (25 bp)
CAAATTCTTCTCAACAGTCTGCAAT
LOC_Os07g34320
OsAffx.5526.1.S1_at--48--7651Chr07:20565605..20565629 (25 bp)
GGGAGGCTCGACACATAGGGCAAAA
LOC_Os07g34320
OsAffx.5526.1.S1_at--1046--10771Chr07:20565744..20565768 (25 bp)
TTGATTGAAGATTGTGCCTGCCGCA
LOC_Os07g34320
OsAffx.5526.1.S1_at--492--9171Chr07:20565762..20565785 (24 bp)
TGCCGCACCCTTGAATTGCAATATT
LOC_Os07g34320
OsAffx.5526.1.S1_at--1101--7511Chr07:20565855..20565879 (25 bp)
GTGGAGCTCTATGTTCTGGATCAAA
LOC_Os07g34320
Target Sequence 
GGGCCGTATTTTTGCTGGGACTCTACTGATAGGAGGCCTCTATAATGTTCTGTGGGGGAAAAACATTGAGGAGCAGGATG
AAGTGAACGACATAGTTGCAGATAAACCAGAATTTGAGATGCAGGGCAAAGAGGCTCAAATGCCTGGTGATGCTGGAACA
AAGAATAGTAGTTCGAGTGGTGGCAGTGTGTCTAAAGATTCTGACATTTCGCTCGCACCAAAGCTCCTAGGCCACCAAGA
TTATCACCGATTTAAGAGCCTTCCGTGGCACATTTGTCCCTTCCAAATTCTTCTCAACAGTCTGCAATTGGCTAGGAGAT
GTAGGGCCGATTCTAGGGAGGCTCGACACATAGGGCAAAAGTGTTGTTTGATTGAAGATTGTGCCTGCCGCACCCTTGAA
TTGCAATATTTTCCAGGTGATAGTATCTGTTTGTTCGCTGTGGAGCTCTATGTTCTGGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis