Browse Element(s) Details


OsAffx.5537.1.S1_at

Description tigr:9635.m03525
TID=OsAffx.5537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35640OsAffx.5536.1.S1_at11/117+21344090..21345214hypothetical protein
LOC_Os07g35650Os.49803.1.S1_at2/117+21351387..21354958Protein kinase domain containing protein
LOC_Os07g35660Os.49408.1.S1_at9/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35660Os.10719.1.S1_at1/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35670OsAffx.5537.1.S1_at11/117+21365818..21366225hypothetical protein
LOC_Os07g35680Os.22699.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35680Os.49408.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.49803.1.S1_at11/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.54931.1.S2_at1/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35700Os.26809.1.S1_at11/117+21383073..21386575Protein kinase domain containing protein, expressed
LOC_Os07g35710NANA7+21387295..21388583SWIM zinc finger family protein
LOC_Os07g35720Os.15770.2.S1_at11/117+21389781..21391866expressed protein
LOC_Os07g35720Os.15770.1.S1_x_at11/117+21389781..21391866expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5537.1.S1_at--329--9211Chr07:21366160..21366184 (25 bp)
TCCAACCATTGAATCTGGGAAGGGT
LOC_Os07g35670
OsAffx.5537.1.S1_at--459--2231Chr07:21366121..21366145 (25 bp)
AAATAAGCTAGGGTGCGCTCGGTCG
LOC_Os07g35670
OsAffx.5537.1.S1_at--791--351Chr07:21366119..21366143 (25 bp)
ATAAGCTAGGGTGCGCTCGGTCGAT
LOC_Os07g35670
OsAffx.5537.1.S1_at--646--9431Chr07:21366103..21366127 (25 bp)
TCGGTCGATGACTATCCTTCCACAC
LOC_Os07g35670
OsAffx.5537.1.S1_at--477--10691Chr07:21366086..21366110 (25 bp)
TTCCACACGCGCCACAGTCTTTGTT
LOC_Os07g35670
OsAffx.5537.1.S1_at--1101--9531Chr07:21366069..21366093 (25 bp)
TCTTTGTTCCCCACGCGCGTGTGCA
LOC_Os07g35670
OsAffx.5537.1.S1_at--804--9491Chr07:21365916..21365940 (25 bp)
TCTGCCTCCACTGTCGCTGATGGTG
LOC_Os07g35670
OsAffx.5537.1.S1_at--247--4292Chr07:21365912..21365936 (25 bp)
CCTCCACTGTCGCTGATGGTGCGGA
LOC_Os07g35670
OsAffx.5537.1.S1_at--154--7791Chr07:21365895..21365919 (25 bp)
GGTGCGGAGGCCGATCTTGCAACAC
LOC_Os07g35670
OsAffx.5537.1.S1_at--193--4691Chr07:21365892..21365916 (25 bp)
GCGGAGGCCGATCTTGCAACACTGA
LOC_Os07g35670
OsAffx.5537.1.S1_at--344--2111Chr07:21365860..21365884 (25 bp)
ACACGACAGCGGCAGGGCGGAAGAG
LOC_Os07g35670
Target Sequence 
TCCAACCATTGAATCTGGGAAGGGTAGGATCGGGAGAGAAAATAAGCTAGGGTGCGCTCGGTCGATGACTATCCTTCCAC
ACGCGCCACAGTCTTTGTTCCCCACGCGCGTGTGCACCGCCGCCTCCTTCATCGCGCCTCACCCGTGGCCTACTCCGGCA
CCAGCTAGTCCTCCTCTACTCTGCCGCCACCGGAGCGGCTTCTCGGTCGCCGCAACCACATACTCCGTCGCCGGCTCATC
CGCCTCTGCCTCCACTGTCGCTGATGGTGCGGAGGCCGATCTTGCAACACTGAAGGAGAAACACGACAGCGGCAGGGCGG
AAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis