Browse Element(s) Details


OsAffx.5579.1.S1_at

Description gb:NM_186992.1
DB_XREF= gi:34901069
GEN=OJ1060_D03.3
TID=OsAffx.5579.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1060_D03.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3957011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein
LOC_Os07g39560Os.47058.1.S1_at11/117+23702460..23707234RNA recognition motif family protein, expressed
LOC_Os07g39570OsAffx.5579.1.S1_at11/117+23713141..23713665hypothetical protein
LOC_Os07g39580Os.38395.5.S1_at10/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.3.S1_x_at7/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.2.S1_x_at5/117+23715289..23718608hypothetical protein
LOC_Os07g39580OsAffx.9103.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39590Os.27414.1.S1_at11/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.1.S1_a_at10/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.2.S1_x_at7/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39600NANA7+23731554..23733011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.47463.1.S1_x_at2/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.14491.2.S1_x_at1/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5579.1.S1_at--504--4051Chr07:23713462..23713486 (25 bp)
CGATGGCCTTCACGCGGCACCTGGA
LOC_Os07g39570
OsAffx.5579.1.S1_at--420--8091Chr07:23713440..23713464 (25 bp)
GGACCAGTAGCCAGTAACGACAACG
LOC_Os07g39570
OsAffx.5579.1.S1_at--1084--3391Chr07:23713436..23713460 (25 bp)
CAGTAGCCAGTAACGACAACGACGA
LOC_Os07g39570
OsAffx.5579.1.S1_at--583--831Chr07:23713410..23713434 (25 bp)
ATGGTTGGCTCGTGCAACTGCCTGT
LOC_Os07g39570
OsAffx.5579.1.S1_at--275--7351Chr07:23713399..23713423 (25 bp)
GTGCAACTGCCTGTGGCTCAAGCGA
LOC_Os07g39570
OsAffx.5579.1.S1_at--132--8671Chr07:23713388..23713412 (25 bp)
TGTGGCTCAAGCGACATCCCCTTGT
LOC_Os07g39570
OsAffx.5579.1.S1_at--155--5671Chr07:23713376..23713400 (25 bp)
GACATCCCCTTGTCTGCGGCAGCAT
LOC_Os07g39570
OsAffx.5579.1.S1_at--684--4531Chr07:23713283..23713307 (25 bp)
GCCGCCACGCGGGTATGATCAGCTT
LOC_Os07g39570
OsAffx.5579.1.S1_at--544--1831Chr07:23713277..23713301 (25 bp)
ACGCGGGTATGATCAGCTTCGGCTA
LOC_Os07g39570
OsAffx.5579.1.S1_at--417--1231Chr07:23713263..23713287 (25 bp)
AGCTTCGGCTACCATTCGACGACTG
LOC_Os07g39570
OsAffx.5579.1.S1_at--1069--4851Chr07:23713256..23713280 (25 bp)
GCTACCATTCGACGACTGGCAAGTA
LOC_Os07g39570
Target Sequence 
CGATGGCCTTCACGCGGCACCTGGACCAGTAGCCAGTAACGACAACGACGACATGGTTGGCTCGTGCAACTGCCTGTGGC
TCAAGCGACATCCCCTTGTCTGCGGCAGCATCATCGTGATCAACCCGGTCACCGGCGAGTCCCTCCATATCCCGTCGCCG
CCGTTGGCGACCAGCCGCAGCCGCCACGCGGGTATGATCAGCTTCGGCTACCATTCGACGACTGGCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis