Browse Element(s) Details


OsAffx.5590.1.S1_at

Description tigr:9635.m04118
TID=OsAffx.5590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4117011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41140Os.12644.1.S1_at11/117+24619369..24623214Leucine Rich Repeat family protein, expressed
LOC_Os07g41150OsAffx.28853.1.S1_at11/117+24626567..24628037glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os07g41160OsAffx.16669.1.S1_at11/117+24630624..24634572expressed protein
LOC_Os07g41170OsAffx.5590.1.S1_at11/117+24640597..24641572expressed protein
LOC_Os07g41180Os.6262.1.S1_at10/117+24653212..24658153Nuclear transport factor 2 domain containing protein, expressed
LOC_Os07g41190Os.7119.1.S1_at11/117+24658444..24660898WD-repeat protein 50, putative, expressed
LOC_Os07g41200Os.27494.1.S1_at10/117+24662565..24667626expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5590.1.S1_at--646--1091Chr07:24641401..24641425 (25 bp)
AGTGGATTCTCACCCACTCGGTGGG
LOC_Os07g41170
OsAffx.5590.1.S1_at--168--9671Chr07:24641410..24641434 (25 bp)
TCACCCACTCGGTGGGTTTCTTAAT
LOC_Os07g41170
OsAffx.5590.1.S1_at--623--8971Chr07:24641439..24641463 (25 bp)
TGAAGAAAAACACACCAAGTGGTGC
LOC_Os07g41170
OsAffx.5590.1.S1_at--852--2151Chr07:24641450..24641474 (25 bp)
ACACCAAGTGGTGCACAAGTTGTGA
LOC_Os07g41170
OsAffx.5590.1.S1_at--1073--5111Chr07:24641462..24641486 (25 bp)
GCACAAGTTGTGATCAATGGTAGTT
LOC_Os07g41170
OsAffx.5590.1.S1_at--1143--6451Chr07:24641473..24641497 (25 bp)
GATCAATGGTAGTTCATCGCAGTCA
LOC_Os07g41170
OsAffx.5590.1.S1_at--520--7851Chr07:24641480..24641504 (25 bp)
GGTAGTTCATCGCAGTCAATCAATG
LOC_Os07g41170
OsAffx.5590.1.S1_at--12--4131Chr07:24641490..24641514 (25 bp)
CGCAGTCAATCAATGTTGGCGATGA
LOC_Os07g41170
OsAffx.5590.1.S1_at--789--8471Chr07:24641506..24641530 (25 bp)
TGGCGATGACACCAATGTGGCGATT
LOC_Os07g41170
OsAffx.5590.1.S1_at--1136--8951Chr07:24641512..24641536 (25 bp)
TGACACCAATGTGGCGATTGCCGAA
LOC_Os07g41170
OsAffx.5590.1.S1_at--32--3211Chr07:24641518..24641542 (25 bp)
CAATGTGGCGATTGCCGAAGACTTA
LOC_Os07g41170
Target Sequence 
AGTGGATTCTCACCCACTCGGTGGGTTTCTTAATTTATTGAAGAAAAACACACCAAGTGGTGCACAAGTTGTGATCAATG
GTAGTTCATCGCAGTCAATCAATGTTGGCGATGACACCAATGTGGCGATTGCCGAAGACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis