Browse Element(s) Details


OsAffx.5606.1.S1_at

Description tigr:9635.m04224
TID=OsAffx.5606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4219011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed
LOC_Os07g42170Os.4720.1.S1_at11/117+25234988..2523575060S ribosomal protein L27a-2, putative, expressed
LOC_Os07g42180Os.23210.1.S1_at11/117+25238070..25246771PAUSED, putative, expressed
LOC_Os07g42190OsAffx.5606.1.S1_at11/117+25249332..25251771hypothetical protein
LOC_Os07g42200Os.53190.1.S1_at11/117+25253371..25258266Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os07g42210Os.35344.18.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210Os.35344.3.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_at7/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_x_at5/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42220OsAffx.16682.1.S1_at11/117+25271689..25272287expressed protein
LOC_Os07g42234NANA7+25273996..25279369retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5606.1.S1_at--369--1291Chr07:25251702..25251726 (25 bp)
AGATGCCAATATTCTCGTCGGTTTG
LOC_Os07g42190
OsAffx.5606.1.S1_at--996--6151Chr07:25251677..25251701 (25 bp)
GAGGTTTCTTGGTCGATCTGACTGA
LOC_Os07g42190
OsAffx.5606.1.S1_at--1151--91Chr07:25251301..25251662 (25 bp)
ATTCGTCGATCAGTCAGTCGTTGTC
LOC_Os07g42190
OsAffx.5606.1.S1_at--612--8711Chr07:25251280..25251304 (25 bp)
TGTCGATTGGTCATCGTTGCCACCA
LOC_Os07g42190
OsAffx.5606.1.S1_at--340--5491Chr07:25251196..25251220 (25 bp)
GAACACCTTGCTGGGAATCTGAGTT
LOC_Os07g42190
OsAffx.5606.1.S1_at--155--5251Chr07:25251182..25251206 (25 bp)
GAATCTGAGTTCACGACATCAACAT
LOC_Os07g42190
OsAffx.5606.1.S1_at--715--10091Chr07:25250789..25250813 (25 bp)
TAGGCATACCAACTATAGCTCAACA
LOC_Os07g42190
OsAffx.5606.1.S1_at--283--4391Chr07:25249867..25249891 (25 bp)
GCCAAGGACTACTTGCTTCCAAGAA
LOC_Os07g42190
OsAffx.5606.1.S1_at--729--371Chr07:25249825..25249849 (25 bp)
ATCAAACCAAGTGCCTACGTGCTTT
LOC_Os07g42190
OsAffx.5606.1.S1_at--757--6331Chr07:25249398..25249422 (25 bp)
GATGCTGATCTCTGTCAGCCAAAAT
LOC_Os07g42190
OsAffx.5606.1.S1_at--670--2191Chr07:25249362..25249386 (25 bp)
ACAACTTGGCTATGTACCACGTGAT
LOC_Os07g42190
Target Sequence 
AGATGCCAATATTCTCGTCGGTTTGGAGGTTTCTTGGTCGATCTGACTGAATATTTTGATCACTATTCGTCGATCAGTCA
GTCGTTGTCGATTGGTCATCGTTGCCACCACTGGAATCCGGGCATCCAGCTGCGACCTGCGACTGCATCTGCATGCACCA
TCCAGATGAGAACACCTTGCTGGGAATCTGAGTTCACGACATCAACATGTTTTTTAGGCATACCAACTATAGCTCAACAA
TCAGAGTTGTGTTTCAATGGATTATTTGCCAAGGACTACTTGCTTCCAAGAAACATCATTCTGGAAACCATCAAACCAAG
TGCCTACGTGCTTTGCAAGTGGATGCTGATCTCTGTCAGCCAAAATGATTCAGAGAAACAACTTGGCTATGTACCACGTG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis