Browse Element(s) Details


OsAffx.5607.1.S1_x_at

Description tigr:9635.m04234
TID=OsAffx.5607.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4228011/11von Willebrand factor type A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42220OsAffx.16682.1.S1_at11/117+25271689..25272287expressed protein
LOC_Os07g42234NANA7+25273996..25279369retrotransposon protein, putative, unclassified
LOC_Os07g42250Os.6411.2.S1_at11/117+25285846..25288436Strictosidine synthase family protein, expressed
LOC_Os07g42260Os.6411.1.S1_a_at11/117+25287562..25292046Proteasome subunit alpha type 6, putative, expressed
LOC_Os07g42270NANA7+25293079..25293903hypothetical protein
LOC_Os07g42280Os.4972.1.S1_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280OsAffx.5607.1.S1_x_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280Os.36147.1.S1_at1/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5607.1.S1_x_at--34--7931Chr07:25301869..25301889 (21 bp)
GGATATACCCCTTGACAAAGTTTTG
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--276--1531Chr07:25302034..25302058 (25 bp)
AGCAGATTGGCCTTCTCACAGCGAA
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--1012--5291Chr07:25302056..25302080 (25 bp)
GAAGGCATGGCTTTCTTCTGACAAG
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--105--4951Chr07:25303149..25303173 (25 bp)
GCATTCCTTCAGAGTACACGAGCAT
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--1025--1631Chr07:25303166..25303190 (25 bp)
ACGAGCATGGTCCTACTTCAAACAT
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--825--8951Chr07:25303356..25303380 (25 bp)
TGAAAGGTCACAAGGGCCCCGACGA
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--312--3031Chr07:25303401..25303425 (25 bp)
AATGCCTCAAGCTCGGGTTCGGCGA
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--1080--5531Chr07:25303442..25303466 (25 bp)
GAGAACCTCGTCACGGGTTTCGGCG
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--1128--5411Chr07:25303471..25303495 (25 bp)
GAAGCCGCTGGAGACGTTCGAGATC
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--826--4991Chr07:25303545..25303569 (25 bp)
GCATGTGCTGCATCAAGGCCTGCAA
LOC_Os07g42280
OsAffx.5607.1.S1_x_at--214--1311Chr07:25303572..25303596 (25 bp)
AGATGAACGACCAGTGCGCCATCGT
LOC_Os07g42280
Target Sequence 
GGATATACCCCTTGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTCTGACAAGC
AACTGGAGAGAAAGGTGGTGAAACTAAGCATTCAAAATAGCATTCCTTCAGAGTACACGAGCATGGTCCTACTTCAAACA
TTGGAGAAGGTAGATGCAGCACAAAAGGTCAAGCAGAAACTGAAAGGTCACAAGGGCCCCGACGAACCTCGACGGATCCC
GCTCCAATGCCTCAAGCTCGGGTTCGGCGACCGGGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGC
CGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGC
ATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5607.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis