Browse Element(s) Details


OsAffx.5676.1.S1_at

Description tigr:9636.m00069
TID=OsAffx.5676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0170011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01680Os.23940.1.A1_at11/118+388883..393753Chromatin assembly factor 1 subunit B, putative, expressed
LOC_Os08g01690Os.51744.1.A1_at11/118+393788..395077transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01700OsAffx.5676.1.S1_at11/118+413088..413999Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g01710OsAffx.28981.1.S1_at11/118+428885..430687glycolipid transfer protein, putative
LOC_Os08g01720NANA8+433131..433424hypothetical protein
LOC_Os08g01730OsAffx.16780.1.S1_at11/118+434401..435121hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5676.1.S1_at--1108--971Chr08:413584..413608 (25 bp)
AGGAGATGATGTACCGGATCGCCGC
LOC_Os08g01700
OsAffx.5676.1.S1_at--875--7971Chr08:413569..413593 (25 bp)
GGATCGCCGCGATGCAGCCGGTGGA
LOC_Os08g01700
OsAffx.5676.1.S1_at--696--391Chr08:413498..413522 (25 bp)
ATCAGCGACGACCCGCAGAGCGTCG
LOC_Os08g01700
OsAffx.5676.1.S1_at--854--10671Chr08:413354..413378 (25 bp)
TTCCTCAAGCGCCAGGTCCAGGAGC
LOC_Os08g01700
OsAffx.5676.1.S1_at--1137--4251Chr08:413238..413262 (25 bp)
CCGGCCATTCTTGCCGCTGGGTGGA
LOC_Os08g01700
OsAffx.5676.1.S1_at--839--8531Chr08:413217..413241 (25 bp)
TGGAGGAGGGCCCATGATCGACTGG
LOC_Os08g01700
OsAffx.5676.1.S1_at--107--711Chr08:413204..413228 (25 bp)
ATGATCGACTGGGTCGGCCTGACCA
LOC_Os08g01700
OsAffx.5676.1.S1_at--140--8931Chr08:413185..413209 (25 bp)
TGACCAGGCCGGTGGACATCCATGG
LOC_Os08g01700
OsAffx.5676.1.S1_at--451--7511Chr08:413174..413198 (25 bp)
GTGGACATCCATGGGCCGACCTCGT
LOC_Os08g01700
OsAffx.5676.1.S1_at--332--6231Chr08:413133..413157 (25 bp)
GATGGGCGGCGCCTTGGGTTTCGGG
LOC_Os08g01700
OsAffx.5676.1.S1_at--1084--4491Chr08:413125..413149 (25 bp)
GCGCCTTGGGTTTCGGGTTCGGCTG
LOC_Os08g01700
Target Sequence 
AGGAGATGATGTACCGGATCGCCGCGATGCAGCCGGTGGACATCGACCCGGCGACCATCAAGAAGCCCCGCCGCCGCAAC
GTCCGCATCAGCGACGACCCGCAGAGCGTCGCCGCCCGCCACCGCCGGGAGCGGATCAGCGAGCGCATCCGCATCCTGCA
GCGCCTCGTCCCGGGGGGGACCAAGATGGACACCGCCTCCATGCTCGACGAGGCCATCCGCTACATCAAGTTCCTCAAGC
GCCAGGTCCAGGAGCTCCAGCACCAGCCGGGACCGCCGCCGCCGCCGTATCCCGCCGGAGCTGCACCGGCCGCCGGGCCC
AGCACCTCGGCCGTGGGCCCACCGGGCCGGCCATTCTTGCCGCTGGGTGGAGGAGGGCCCATGATCGACTGGGTCGGCCT
GACCAGGCCGGTGGACATCCATGGGCCGACCTCGTCGTCGTCCTCGTCGTCGATGGGCGGCGCCTTGGGTTTCGGGTTCG
GCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis