Browse Element(s) Details


OsAffx.28981.1.S1_at

Description tigr:9636.m00070
TID=OsAffx.28981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0171011/11glycolipid transfer protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01700OsAffx.5676.1.S1_at11/118+413088..413999Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g01710OsAffx.28981.1.S1_at11/118+428885..430687glycolipid transfer protein, putative
LOC_Os08g01720NANA8+433131..433424hypothetical protein
LOC_Os08g01730OsAffx.16780.1.S1_at11/118+434401..435121hypothetical protein
LOC_Os08g01740Os.6020.1.S1_at11/118+439196..444042VHS domain containing protein, expressed
LOC_Os08g01750Os.8086.1.S1_at11/118+444796..451880phosphoinositide phosphatase family protein, putative, expressed
LOC_Os08g01760Os.11284.1.S1_at11/118+452186..454961oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g01770Os.11664.1.S1_at10/118+455090..458466Adenylate kinase, chloroplast, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28981.1.S1_at--1073--5791Chr08:429906..429930 (25 bp)
GACCGACTTTACTAGTCCTGAGGCA
LOC_Os08g01710
OsAffx.28981.1.S1_at--968--7991Chr08:429710..429734 (25 bp)
GGATGTGCTTGCAAGGGACCCTTCC
LOC_Os08g01710
OsAffx.28981.1.S1_at--738--8091Chr08:429695..429719 (25 bp)
GGACCCTTCCAAATATTCAAGCCTG
LOC_Os08g01710
OsAffx.28981.1.S1_at--917--2731Chr08:429631..429655 (25 bp)
AAGAAGGCCAATAGCTGCACCAGAG
LOC_Os08g01710
OsAffx.28981.1.S1_at--734--3671Chr08:429536..429630 (25 bp)
CTATTCTTTGGTTGGCTAGTGCCGT
LOC_Os08g01710
OsAffx.28981.1.S1_at--294--4671Chr08:429508..429532 (25 bp)
GCGGATTCTTCCAATTAGGTCGATA
LOC_Os08g01710
OsAffx.28981.1.S1_at--144--1771Chr08:429447..429471 (25 bp)
ACCTGTGATCAGTCGAGCCTCAGAG
LOC_Os08g01710
OsAffx.28981.1.S1_at--864--8571Chr08:429379..429403 (25 bp)
TGGTTGGATCTCATCAGCTGCTTAC
LOC_Os08g01710
OsAffx.28981.1.S1_at--506--7731Chr08:429141..429165 (25 bp)
GGTGGCACAGAAGCTCATTCCGGAA
LOC_Os08g01710
OsAffx.28981.1.S1_at--566--5311Chr08:429051..429075 (25 bp)
GAAGGTCTTGCTCTCCATTGTCCAG
LOC_Os08g01710
OsAffx.28981.1.S1_at--1094--31Chr08:429035..429059 (25 bp)
ATTGTCCAGCCCCTCATAGAAGAGG
LOC_Os08g01710
Target Sequence 
GACCGACTTTACTAGTCCTGAGGCAAGACATTCAGCAAAATGTTCAGAGATTACAGGATGTGCTTGCAAGGGACCCTTCC
AAATATTCAAGCCTGACAGCAATAGTGACAGAGGAAGTGGAGGAAGGGACCTCAAAGAAGGCCAATAGCTGCACCAGAGC
TATTCTTTGGTTGGCTAGTGCCGTGTTGCGGATTCTTCCAATTAGGTCGATAAATTTCTCAAAACATTTACTGGAGGGGT
TGCTTAACACCTGTGATCAGTCGAGCCTCAGAGAGATCGTCGAAAAGGCGTATATTACTACATTGAAGCCATGGCATGGT
TGGATCTCATCAGCTGCTTACAGGGTGGCACAGAAGCTCATTCCGGAAAAGGAGATCTTCATAGCATTGCTGATGGGGAA
CTGTCAGGAATTTGAGGTTTTCGCAAAAGATGTGAAGGTCTTGCTCTCCATTGTCCAGCCCCTCATAGAAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis