Browse Element(s) Details


Os.11284.1.S1_at

Description gb:AK101912.1
DB_XREF= gi:32987121
TID=Os.11284.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071G08, full insert sequence.
FL= gb:AK101912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0176011/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01710OsAffx.28981.1.S1_at11/118+428885..430687glycolipid transfer protein, putative
LOC_Os08g01720NANA8+433131..433424hypothetical protein
LOC_Os08g01730OsAffx.16780.1.S1_at11/118+434401..435121hypothetical protein
LOC_Os08g01740Os.6020.1.S1_at11/118+439196..444042VHS domain containing protein, expressed
LOC_Os08g01750Os.8086.1.S1_at11/118+444796..451880phosphoinositide phosphatase family protein, putative, expressed
LOC_Os08g01760Os.11284.1.S1_at11/118+452186..454961oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g01770Os.11664.1.S1_at10/118+455090..458466Adenylate kinase, chloroplast, putative, expressed
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed
LOC_Os08g01794Os.15478.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794OsAffx.16781.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.15478.1.S1_x_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.33350.3.S1_x_at1/118+469069..476631Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0045333biological_processcellular respiration
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004327molecular_functionformaldehyde dehydrogenase (glutathione) activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11284.1.S1_at--1098--3591Chr08:454128..454152 (25 bp)
CATTGACATTTTCTCAGTGCGCCAA
LOC_Os08g01760
Os.11284.1.S1_at--50--1611Chr08:454174..454198 (25 bp)
AGCTGTTATGATTGGCCTTGCTGCC
LOC_Os08g01760
Os.11284.1.S1_at--1148--6131Chr08:454214..454238 (25 bp)
GAGGTGGATATAACCCGTCTTGTTC
LOC_Os08g01760
Os.11284.1.S1_at--883--7131Chr08:454230..454593 (25 bp)
GTCTTGTTCGCCGACAGGTGAAGAT
LOC_Os08g01760
Os.11284.1.S1_at--418--2811Chr08:454589..454613 (25 bp)
AAGATCATTGGGTCGTATGGTGCAA
LOC_Os08g01760
Os.11284.1.S1_at--471--8231Chr08:454620..454644 (25 bp)
GGCAAGATCTTCCTCAGATAGTCAA
LOC_Os08g01760
Os.11284.1.S1_at--638--7551Chr08:454659..454683 (25 bp)
GGGCCTTCAATCTTAAGAACACCAT
LOC_Os08g01760
Os.11284.1.S1_at--286--10851Chr08:454749..454773 (25 bp)
TTGGGCGAGCCGTAGTTGAGATCAT
LOC_Os08g01760
Os.11284.1.S1_at--1077--6451Chr08:454787..454811 (25 bp)
GATAATTCTGTGGTTCATAGCCTGG
LOC_Os08g01760
Os.11284.1.S1_at--383--7631Chr08:454810..454834 (25 bp)
GGGATCCCACTCTGGGTCAATGAAA
LOC_Os08g01760
Os.11284.1.S1_at--328--8331Chr08:454841..454865 (25 bp)
GGCTGTGACACTACATATTCCATGA
LOC_Os08g01760
Target Sequence 
CATTGACATTTTCTCAGTGCGCCAAAAGTGTACGAGATGGAGGCAAAGCTGTTATGATTGGCCTTGCTGCCACAAATGTG
ATGGGGGAGGTGGATATAACCCGTCTTGTTCGCCGACAGGTGAAGATCATTGGGTCGTATGGTGCAAGGGCCNAGGCAAG
ATCTTCCTCAGATAGTCAAGCTTGCNAGAGAGTGGGGCCTTCAATCTTAAGAACACCATATCAAGGAAATGCAAGTTTGA
AGAGGCGAACAGCGCNTACGAGGATCTTGACCGTGGCAAGATCGTTGGGCGAGCCGTAGTTGAGATCATGTCGTAGTGAT
GAGATAATTCTGTGGTTCATAGCCTGGGATCCCACTCTGGGTCAATGAAATAAGTAGGCTGTGACACTACATATTCCATG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis