Browse Element(s) Details


Os.52594.1.S1_at

Description gb:AK068232.1
DB_XREF= gi:32978250
TID=Os.52594.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149D08, full insert sequence.
FL= gb:AK068232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g017804/11AUX/IAA family protein, expressed
LOC_Os06g248501/11AUX/IAA family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01740Os.6020.1.S1_at11/118+439196..444042VHS domain containing protein, expressed
LOC_Os08g01750Os.8086.1.S1_at11/118+444796..451880phosphoinositide phosphatase family protein, putative, expressed
LOC_Os08g01760Os.11284.1.S1_at11/118+452186..454961oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g01770Os.11664.1.S1_at10/118+455090..458466Adenylate kinase, chloroplast, putative, expressed
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed
LOC_Os08g01794Os.15478.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794OsAffx.16781.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.15478.1.S1_x_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.33350.3.S1_x_at1/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01810OsAffx.16782.1.S1_at11/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01810Os.19597.1.S1_at3/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01820OsAffx.28983.1.S1_at11/118+487336..488558hypothetical protein
LOC_Os08g01820Os.38109.1.S1_at1/118+487336..488558hypothetical protein
LOC_Os08g01830Os.56382.1.S1_at11/118+490595..493672Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52594.1.S1_at--156--9772Chr08:466361..466385 (25 bp)
TAATGAGGGAGACCGCATGCTCGTC
LOC_Os08g01780
Os.52594.1.S1_at--550--7632Chr08:466524..466544 (21 bp)
GGGAGCTGTTCATTGCTTCAGTGAA
LOC_Os08g01780
Os.52594.1.S1_at--672--912Chr08:466546..466570 (25 bp)
AGGCTCTACATTGCTCAGGATCCTA
LOC_Os08g01780
Os.52594.1.S1_at--105--3492Chr08:466561..466585 (25 bp)
CAGGATCCTAGAGTTCATGCGAAGC
LOC_Os08g01780
Os.52594.1.S1_at--66--6672Chr08:466718..466742 (25 bp)
GTTGCAAGCTGATCCTGAAAGCCTG
NONE
Os.52594.1.S1_at--1099--8951Chr08:466733..466757 (25 bp)
TGAAAGCCTGGACCGCAACCGAGGA
NONE
Os.52594.1.S1_at--529--1112Chr08:466867..466891 (25 bp)
AGTGTTTAGCTGACATGCTGTCCCT
NONE
Os.52594.1.S1_at--19--4732Chr08:466883..466907 (25 bp)
GCTGTCCCTGTTCGCTTAATTAGTA
NONE
Os.52594.1.S1_at--1045--6932Chr08:466996..467020 (25 bp)
GTAGACTTCTAGTGCGGTTAATGTA
NONE
Os.52594.1.S1_at--1030--7771Chr08:467076..467100 (25 bp)
GGTGCATTAGCTAGTGCTTGTTAAT
NONE
Os.52594.1.S1_at--443--7771NONE
GGTGCAATAAACTAGTCTTGGGTCC
NONE
Target Sequence 
TAATGAGGGAGACCGCATGCTCGTCGGCGACGTCCCATGGGAGCTGTTCATTGCTTCAGTGAAGAGGCTCTACATTGCTC
AGGATCCTAGAGTTCATGCGAAGCTACGATAATAGCAATGTTGCAAGCTGATCCTGAAAGCCTGGACCGCAACCGAGGAT
GAGAAAGATCGATTGCTGCTTTTATCATGAGCAGATGCAAGGAAATATATATATGGCATAGGATGACAGGAGCATCATAT
TCAAAGAGACGAAGCAGCAATATGTGCTAGTGTTTAGCTGACATGCTGTCCCTGTTCGCTTAATTAGTAGAATGATTAAA
TTTGCCTTGGTTGTGCTTGAGGGAGCTAGTGCTCATACTAGACTATACTAATTCCCTAAAAAAAAACAACAAAAAAAGTA
GACTTCTAGTGCGGTTAATGTAGAAAGTTTTGGTTGTGTATATATTTTTTGACCTGTTGTACTATAATTGAACTGATGGT
GCATTAGCTAGTGCTTGTTAATTAGCTTGTACTATGTGTGTGGGTGGATGTAAATGACACTGGGTGCAATAAACTAGTCT
TGGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis