Browse Element(s) Details


Os.15478.1.S1_at

Description gb:AK120789.1
DB_XREF= gi:37990412
TID=Os.15478.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011K01, full insert sequence.
FL= gb:AK069943.1 gb:AK120789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0179411/11Bromodomain containing protein, expressed
LOC_Os06g248702/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01750Os.8086.1.S1_at11/118+444796..451880phosphoinositide phosphatase family protein, putative, expressed
LOC_Os08g01760Os.11284.1.S1_at11/118+452186..454961oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g01770Os.11664.1.S1_at10/118+455090..458466Adenylate kinase, chloroplast, putative, expressed
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed
LOC_Os08g01794Os.15478.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794OsAffx.16781.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.15478.1.S1_x_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.33350.3.S1_x_at1/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01810OsAffx.16782.1.S1_at11/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01810Os.19597.1.S1_at3/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01820OsAffx.28983.1.S1_at11/118+487336..488558hypothetical protein
LOC_Os08g01820Os.38109.1.S1_at1/118+487336..488558hypothetical protein
LOC_Os08g01830Os.56382.1.S1_at11/118+490595..493672Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15478.1.S1_at--375--2132Chr08:476043..476067 (25 bp)
ACAGAAACAAGCCAGGAGATTGAAA
LOC_Os08g01794
Os.15478.1.S1_at--60--3412Chr08:476044..476068 (25 bp)
CAGAAACAAGCCAGGAGATTGAAAT
LOC_Os08g01794
Os.15478.1.S1_at--228--3191Chr08:476197..476221 (25 bp)
CAATGAAGGGAAGCCCTCTGCATGC
LOC_Os08g01794
Os.15478.1.S1_at--127--5331Chr08:476201..476225 (25 bp)
GAAGGGAAGCCCTCTGCATGCGGCC
LOC_Os08g01794
Os.15478.1.S1_at--178--2891Chr08:476202..476226 (25 bp)
AAGGGAAGCCCTCTGCATGCGGCCA
LOC_Os08g01794
Os.15478.1.S1_at--896--1071Chr08:476203..476227 (25 bp)
AGGGAAGCCCTCTGCATGCGGCCAT
LOC_Os08g01794
Os.15478.1.S1_at--1015--7611Chr08:476204..476228 (25 bp)
GGGAAGCCCTCTGCATGCGGCCATA
LOC_Os08g01794
Os.15478.1.S1_at--1099--8171Chr08:476205..476229 (25 bp)
GGAAGCCCTCTGCATGCGGCCATAA
LOC_Os08g01794
Os.15478.1.S1_at--1153--5391Chr08:476206..476230 (25 bp)
GAAGCCCTCTGCATGCGGCCATAAC
LOC_Os08g01794
Os.15478.1.S1_at--970--2651Chr08:476207..476231 (25 bp)
AAGCCCTCTGCATGCGGCCATAACA
LOC_Os08g01794
Os.15478.1.S1_at--201--1671Chr08:476208..476232 (25 bp)
AGCCCTCTGCATGCGGCCATAACAG
LOC_Os08g01794
Target Sequence 
ACAGAAACAAGCCAGGAGATTGAAATGGAGGATTATCCCATACAGAANGAGAACCAATCATTCTTGCAACTCTGNGCACG
GNNNTTTCCCCAGCAACCAGAGTTCTGTTTTCAGGGGACGCCATTCTCTGTTCCGACAGCAACAGCGGCAGGTTTCAATG
AAGGGAAGCCCTCTGCATGCGGCCATAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis