Browse Element(s) Details


Os.8086.1.S1_at

Description gb:AK121887.1
DB_XREF= gi:37991510
TID=Os.8086.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105A05, full insert sequence.
FL= gb:AK121887.1 gb:AK062002.1 gb:AK120484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0175011/11phosphoinositide phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01710OsAffx.28981.1.S1_at11/118+428885..430687glycolipid transfer protein, putative
LOC_Os08g01720NANA8+433131..433424hypothetical protein
LOC_Os08g01730OsAffx.16780.1.S1_at11/118+434401..435121hypothetical protein
LOC_Os08g01740Os.6020.1.S1_at11/118+439196..444042VHS domain containing protein, expressed
LOC_Os08g01750Os.8086.1.S1_at11/118+444796..451880phosphoinositide phosphatase family protein, putative, expressed
LOC_Os08g01760Os.11284.1.S1_at11/118+452186..454961oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g01770Os.11664.1.S1_at10/118+455090..458466Adenylate kinase, chloroplast, putative, expressed
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed
LOC_Os08g01794Os.15478.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794OsAffx.16781.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.15478.1.S1_x_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.33350.3.S1_x_at1/118+469069..476631Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8086.1.S1_at--74--2691Chr08:451305..451329 (25 bp)
AAGCTGCCCTGGACGATTACCAGAT
LOC_Os08g01750
Os.8086.1.S1_at--609--1751Chr08:451341..451365 (25 bp)
ACCTCAGCATTATTCCATCTTGTGG
LOC_Os08g01750
Os.8086.1.S1_at--1084--3551Chr08:451356..451380 (25 bp)
CATCTTGTGGATCGCTCGCTGAAGA
LOC_Os08g01750
Os.8086.1.S1_at--688--2851Chr08:451425..451449 (25 bp)
AAGTCGCACAGTAGCCCTTTTCTTT
LOC_Os08g01750
Os.8086.1.S1_at--1112--2131Chr08:451468..451492 (25 bp)
ACAGATTTCTACAGCAGCCTTGTCA
LOC_Os08g01750
Os.8086.1.S1_at--65--4651Chr08:451507..451531 (25 bp)
GCGTAGATACGAAGCTCTTACCATA
LOC_Os08g01750
Os.8086.1.S1_at--1098--331Chr08:451529..451553 (25 bp)
ATACAAAAGAGCTACCCCAGCCGGT
LOC_Os08g01750
Os.8086.1.S1_at--829--3371Chr08:451546..451570 (25 bp)
CAGCCGGTGTTTTTATCCATTTTGC
LOC_Os08g01750
Os.8086.1.S1_at--288--9132Chr11:2374822..2374920 (24 bp)
TGCTGGGAGCAACCATGCATGCAAA
NONE
Os.8086.1.S1_at--308--6771Chr08:451751..451775 (25 bp)
GTTAAGATTTCTGGCCTGTATTTTC
LOC_Os08g01750
Os.8086.1.S1_at--244--2771Chr08:451837..451861 (25 bp)
AAGAGCTTGTCTCCCTAAATGACGG
LOC_Os08g01750
Target Sequence 
AAGCTGCCCTGGACGATTACCAGATAATAGGTTCAGACCTCAGCATTATTCCATCTTGTGGATCGCTCGCTGAAGATCCA
AGCCAGCTGACGAGGTGGATCATTGGTGATGATAAACTGCAAGTCGCACAGTAGCCCTTTTCTTTTTTTTGCCNAAGGGC
TGTACAGATTTCTACAGCAGCCTTGTCATTCATAAACCAGTTGCGTAGATACGAAGCTCTTACCATACAAAAGAGCTACC
CCAGCCGGTGTTTTTATCCATTTTGCTGGGAGCAACCATGCATGCAAATAAACATTGCTGGAGGCAAGGTTAGCTTTATT
TGTACATATAGGATTGGAGAGCATAAACATGGAGGGATAGCACTACTTGGGAGTATTAAGTGTATGAAGCAGATCAAAGC
TGTATTTTTTTTTGTTGAATAAACTGTATGTGTGTAGTCTTCATTTGTTAAGATTTCTGGCCTGTATTTTCTTGGGTTGG
AAAAATGAAATGCATTCACAAGTGGAGTGGTTAGTTATAGTTAAGACTTAGTAAGAGCTTGTCTCCCTAAATGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis