Browse Element(s) Details


Os.11664.1.S1_at

Description gb:AK066688.1
DB_XREF= gi:32976706
TID=Os.11664.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073K09, full insert sequence.
FL= gb:AK066688.1 gb:AK061825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0177010/11Adenylate kinase, chloroplast, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01710OsAffx.28981.1.S1_at11/118+428885..430687glycolipid transfer protein, putative
LOC_Os08g01720NANA8+433131..433424hypothetical protein
LOC_Os08g01730OsAffx.16780.1.S1_at11/118+434401..435121hypothetical protein
LOC_Os08g01740Os.6020.1.S1_at11/118+439196..444042VHS domain containing protein, expressed
LOC_Os08g01750Os.8086.1.S1_at11/118+444796..451880phosphoinositide phosphatase family protein, putative, expressed
LOC_Os08g01760Os.11284.1.S1_at11/118+452186..454961oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g01770Os.11664.1.S1_at10/118+455090..458466Adenylate kinase, chloroplast, putative, expressed
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed
LOC_Os08g01794Os.15478.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794OsAffx.16781.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.15478.1.S1_x_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.33350.3.S1_x_at1/118+469069..476631Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004017molecular_functionadenylate kinase activity
GO:0019201molecular_functionnucleotide kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11664.1.S1_at--985--6291Chr08:455642..455666 (25 bp)
GATGATGTGTTTGCTGAGATCGACA
LOC_Os08g01770
Os.11664.1.S1_at--830--3191Chr08:455619..455643 (25 bp)
CAAGCAGCTGACTTCTAGCCTTGAT
LOC_Os08g01770
Os.11664.1.S1_at--1162--2291Chr08:455584..455608 (25 bp)
AAATGGTGGCTAGCGCATGAGCAAA
LOC_Os08g01770
Os.11664.1.S1_at--661--5951Chr08:455566..455590 (25 bp)
GAGCAAAAGATCTGTGCCGATTGAA
LOC_Os08g01770
Os.11664.1.S1_at--450--2731Chr08:455471..455495 (25 bp)
AAGAATCCCATTATTGTTGTAGACA
LOC_Os08g01770
Os.11664.1.S1_at--1007--8191Chr08:455443..455467 (25 bp)
GGAAGTGACAAAGCATCGACAGGAT
LOC_Os08g01770
Os.11664.1.S1_at--966--6271Chr08:455388..455412 (25 bp)
GATGTACATGCATAGCTGCTGTCCT
LOC_Os08g01770
Os.11664.1.S1_at--935--1591Chr08:455375..455399 (25 bp)
AGCTGCTGTCCTGTAAACACCTCTA
LOC_Os08g01770
Os.11664.1.S1_at--405--51Chr08:455288..455312 (25 bp)
ATTGTATTTGCGGAGCCCTAGCAGC
LOC_Os08g01770
Os.11664.1.S1_at--609--7391Chr08:455174..455198 (25 bp)
GTGATGATTCTGTGCTACTATAAAC
LOC_Os08g01770
Os.11664.1.S1_at--53--8851NONE
TGATCTTGTATGAAGCATTGAGCCC
NONE
Target Sequence 
GATGATGTGTTTGCTGAGATCGACAAGCAGCTGACTTCTAGCCTTGATAAGAAAACAGAAATGGTGGCTAGCGCATGAGC
AAAAGATCTGTGCCGATTGAACNTGCTCAGATTCACTTATTTTATACTTTTCCATGTAGTTGGAAATTGGAAGTATGGGA
ATTTTGGTTTGAAGAATCCCATTATTGTTGTAGACAAATGGAAGTGACAAAGCATCGACAGGATGAATGTTAGAAATCTT
TCTATCANACCTTTGATGTACATGCATAGCTGCTGTCCTGTAAACACCTCTACCGAAGAAATGGTTAGGAATGTATTTGA
TNTACAACCCTAATGAAAGGGTTGACTTCATTTGATTGTATTTGCGGAGCCCTAGCAGCTGTTTGTTTCTACTTTCTACT
GCTTCTGGGAGTATCTGTATATGTATCTACCCTATAGATGTTTCTGATGCTAANTCAAAACATGTTATGTGATGATTCTG
TGCTACTATAAACTAGATATCTGGNTCTAAAACACAACAGGCAATGCTTATATCAAGCAACTACAATATGTATGATCTTG
TATGAAGCATTGAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis