Browse Element(s) Details


OsAffx.16782.1.S1_at

Description tigr:9636.m00080
TID=OsAffx.16782.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SAR DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0181011/11SAR DNA-binding protein, putative
LOC_Os06g249209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed
LOC_Os08g01794Os.15478.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794OsAffx.16781.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.15478.1.S1_x_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.33350.3.S1_x_at1/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01810OsAffx.16782.1.S1_at11/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01810Os.19597.1.S1_at3/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01820OsAffx.28983.1.S1_at11/118+487336..488558hypothetical protein
LOC_Os08g01820Os.38109.1.S1_at1/118+487336..488558hypothetical protein
LOC_Os08g01830Os.56382.1.S1_at11/118+490595..493672Protein kinase domain containing protein, expressed
LOC_Os08g01840Os.7406.1.S1_at11/118+507410..511930survival motor neuron domain containing 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16782.1.S1_at--416--1332Chr08:484602..484626 (25 bp)
AGAGGATTGCCTCCCGATGTGTGAA
LOC_Os08g01810
OsAffx.16782.1.S1_at--206--10472Chr08:484567..484591 (25 bp)
TTACCCTGAATAAGTATGGCTTCGG
LOC_Os08g01810
OsAffx.16782.1.S1_at--873--852Chr08:484552..484576 (25 bp)
ATGGCTTCGGTGATCTCAAACCAGA
LOC_Os08g01810
OsAffx.16782.1.S1_at--7--7572Chr08:484275..484299 (25 bp)
GGGCCTCTTGTACGAGACTGACTAT
LOC_Os08g01810
OsAffx.16782.1.S1_at--122--5992Chr08:484262..484286 (25 bp)
GAGACTGACTATCATGTGAGGAAAC
LOC_Os08g01810
OsAffx.16782.1.S1_at--728--2492Chr08:484240..484264 (25 bp)
AACATGGTGAGAGCATGCGCTATGC
LOC_Os08g01810
OsAffx.16782.1.S1_at--937--9152Chr08:484225..484249 (25 bp)
TGCGCTATGCTGGTAAGCACCTGAA
LOC_Os08g01810
OsAffx.16782.1.S1_at--215--2612Chr08:484184..484208 (25 bp)
AACGCTGAGGATTGGGACCTGCTGA
LOC_Os08g01810
OsAffx.16782.1.S1_at--47--5552Chr08:484161..484185 (25 bp)
GAAACTTGCAACTGCTATCATGATG
LOC_Os08g01810
OsAffx.16782.1.S1_at--480--1871Chr08:483801..483825 (25 bp)
ACGAGCTAGGCTCAACAAGCGCAGC
LOC_Os08g01810
OsAffx.16782.1.S1_at--870--2771Chr08:483761..483785 (25 bp)
AAGAGTAACTCTCCACTGTTCTTAC
LOC_Os08g01810
Target Sequence 
AGAGGATTGCCTCCCGATGTGTGAAGGGATGAAATTTACCCTGAATAAGTATGGCTTCGGTGATCTCAAACCAGAGATGG
TTACTAGAAGTATCATTGAGGCGACGGGCCTCTTGTACGAGACTGACTATCATGTGAGGAAACATGGTGAGAGCATGCGC
TATGCTGGTAAGCACCTGAAGNAGANATCTGGNATCAACGCTGAGGATTGGGACCTGCTGAAACTTGCAACTGCTATCAT
GATGTTATGTTACCCTAATGGTGAATACAAGTTGGTTGGGAACCTTCCCGAGNTTTNNNNANANGNCNNNNNAANGNTGG
NNGATNANGCGCCTAAATATAAAGGTATATTCCGGAAGTTGTCTTGCTTGAGGGCTTATGCAGAAATGGTGCGGTCCCGT
AGAATTAGGTCTAAGGCGGCTCGTCGTTTGGACTCTTTAGTCACGGCAGCTGAACGCATCTACGACGAGCTAGGCTCAAC
AAGCGCAGCCAGGAGTGATCAAACAAGAGTAACTCTCCACTGTTCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis