Browse Element(s) Details


Os.7406.1.S1_at

Description gb:CB619845
DB_XREF= gi:29614832
DB_XREF=OSIIEa04K21.r
CLONE=OSIIEa04K21
TID=Os.7406.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.7406 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_178361.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0184011/11survival motor neuron domain containing 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01810OsAffx.16782.1.S1_at11/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01810Os.19597.1.S1_at3/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01820OsAffx.28983.1.S1_at11/118+487336..488558hypothetical protein
LOC_Os08g01820Os.38109.1.S1_at1/118+487336..488558hypothetical protein
LOC_Os08g01830Os.56382.1.S1_at11/118+490595..493672Protein kinase domain containing protein, expressed
LOC_Os08g01840Os.7406.1.S1_at11/118+507410..511930survival motor neuron domain containing 1, putative, expressed
LOC_Os08g01850Os.5795.1.S1_at11/118+513314..517530hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g01860NANA8+522751..523306hypothetical protein
LOC_Os08g01870Os.52705.1.S1_at11/118+530021..532685Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01880Os.10492.1.S1_at11/118+533457..535261synaptobrevin-related family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7406.1.S1_at--202--2131Chr08:508621..508645 (25 bp)
ACAGGCAGCAACATCTGACTTTCAG
LOC_Os08g01840
Os.7406.1.S1_at--1123--2031Chr08:508604..508628 (25 bp)
ACTTTCAGATGCGTAGCTTACCCAC
LOC_Os08g01840
Os.7406.1.S1_at--365--2431Chr08:508093..508117 (25 bp)
AAAAGCCCGCTTTGAGCAGCTAGAA
LOC_Os08g01840
Os.7406.1.S1_at--913--4991Chr08:508044..508068 (25 bp)
GCATGGCAGCAGTTCCAAACGACCA
LOC_Os08g01840
Os.7406.1.S1_at--844--8051Chr08:507712..507736 (25 bp)
GGAGAGCATCTTCAAGTCACCGGAT
LOC_Os08g01840
Os.7406.1.S1_at--1121--5311Chr08:507629..507653 (25 bp)
GAAGGGAGAAGCACCTCCATCTCAA
LOC_Os08g01840
Os.7406.1.S1_at--934--851Chr08:507602..507626 (25 bp)
ATGGCTCTTCCGATGCATTGGACGA
LOC_Os08g01840
Os.7406.1.S1_at--821--9811Chr08:507573..507597 (25 bp)
TAAACCGGCTTAGGCTTTTAGCTTG
LOC_Os08g01840
Os.7406.1.S1_at--517--5831Chr08:507503..507527 (25 bp)
GACCTGGTCTGAGTGGAGTTTGTAC
LOC_Os08g01840
Os.7406.1.S1_at--1092--3611Chr08:507477..507501 (25 bp)
CTTGTACCAATGTATGCTCCACTTG
LOC_Os08g01840
Os.7406.1.S1_at--1134--6891Chr08:507466..507490 (25 bp)
GTATGCTCCACTTGTCCAAACTAGA
LOC_Os08g01840
Target Sequence 
ACAGGCAGCAACATCTGACTTTCAGATGCGTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCNGAGGATGTGA
AAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTGAGCAGCTAGAATTTGCACAAAATAAGAGG
CAGAATGCATGGCAGCAGTTCCAAACGACCAAAGGGAAAGCCAAAAAGGTTGGGTTCTTTTCCGGTCGCAAAAAGGAGAG
CATCTTCAAGTCACCGGATGATCACAGAGGTAAGGTCGGTGTCACTGGGAGCGGGAAAGGCCTTACCGAGTTCCAGAGAA
GGGAGAAGCACCTCCATCTCAAGGATGGCTCTTCCGATGCATTGGACGAGGAATAAACCGGCTTAGGCTTTTAGCTTGTG
AGAGGCGTATCACAAACACCGCCATGTCCGGCGCTTATTTCCGGACCTGGTCTGAGTGGAGTTTGTACTCTTGTACCAAT
GTATGCTCCACTTGTCCAAACTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis