Browse Element(s) Details


Os.5795.1.S1_at

Description gb:AK073752.1
DB_XREF= gi:32983775
TID=Os.5795.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068G24, full insert sequence.
FL= gb:AK071992.1 gb:AK073752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0185011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01820OsAffx.28983.1.S1_at11/118+487336..488558hypothetical protein
LOC_Os08g01820Os.38109.1.S1_at1/118+487336..488558hypothetical protein
LOC_Os08g01830Os.56382.1.S1_at11/118+490595..493672Protein kinase domain containing protein, expressed
LOC_Os08g01840Os.7406.1.S1_at11/118+507410..511930survival motor neuron domain containing 1, putative, expressed
LOC_Os08g01850Os.5795.1.S1_at11/118+513314..517530hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g01860NANA8+522751..523306hypothetical protein
LOC_Os08g01870Os.52705.1.S1_at11/118+530021..532685Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01880Os.10492.1.S1_at11/118+533457..535261synaptobrevin-related family protein, putative, expressed
LOC_Os08g01890Os.14407.1.S1_at11/118+540492..543049expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5795.1.S1_at--405--3751Chr08:513865..513889 (25 bp)
CTCTAGCCCCAATCATGGAGAAGCT
LOC_Os08g01850
Os.5795.1.S1_at--662--9611Chr08:513799..513823 (25 bp)
TCATCCAGACGCTCGATGATCGAAT
LOC_Os08g01850
Os.5795.1.S1_at--773--711Chr08:513784..513808 (25 bp)
ATGATCGAATGCTCTCGCCTGATGT
LOC_Os08g01850
Os.5795.1.S1_at--337--1611Chr08:513751..513775 (25 bp)
AGCTGGTCAGGGAGAACCCGCCCGA
LOC_Os08g01850
Os.5795.1.S1_at--831--4211Chr08:513734..513758 (25 bp)
CCGCCCGACGGGATCTTCAAGATAA
LOC_Os08g01850
Os.5795.1.S1_at--945--331Chr08:513713..513737 (25 bp)
ATAAAGGGTGGCGACCATTGCCCCT
LOC_Os08g01850
Os.5795.1.S1_at--259--4511Chr08:513678..513702 (25 bp)
GCCGCAATCCCTCAACAAGATCTTG
LOC_Os08g01850
Os.5795.1.S1_at--1048--6031Chr08:513650..513674 (25 bp)
GAGATCGCTCAGATTCAAGCTCCGA
LOC_Os08g01850
Os.5795.1.S1_at--154--3171Chr08:513467..513491 (25 bp)
AATTGAAACCAGTCGGCTGCCAGAA
LOC_Os08g01850
Os.5795.1.S1_at--217--5871Chr08:513371..513395 (25 bp)
GAGCCTATGAGAGATCTTCAGTCAG
LOC_Os08g01850
Os.5795.1.S1_at--231--7351Chr08:513330..513354 (25 bp)
GTGAATTACAGGTTCTTCAGTCTGA
LOC_Os08g01850
Target Sequence 
CTCTAGCCCCAATCATGGAGAAGCTCTCCCTCACCCCAGAAAACTATGGCACCGTCCCACGCTACTTCATCCAGACGCTC
GATGATCGAATGCTCTCGCCTGATGTCCAGGAGAAGCTGGTCAGGGAGAACCCGCCCGACGGGATCTTCAAGATAAAGGG
TGGCGACCATTGCCCCTTCTTCTCGAAGCCGCAATCCCTCAACAAGATCTTGCTTGAGATCGCTCAGATTCAAGCTCCGA
CGGCGCTGCTCCCAGGCAAGGCGAAGACGGAGGCGATAGAGGCAACAGAGGCTAAGACAGAAGAAGAGAAAACTGAGAAA
TTATCATGACTTTGTATTGTGTATGTACATGTAAGGGTAGTAGCACATAGGTTGCAAACAGGAGGAAATACCAGGATCAA
TTGAAACCAGTCGGCTGCCAGAATAATAATGTACCAGTAGGAAGACGAAAAAATGTTGTTCTTTTTTCTTCTTTTGTGAT
CAAGTATAGAGAATGAGCCTATGAGAGATCTTCAGTCAGATATATGTTTANACCTTGTGAATTACAGGTTCTTCAGTCTG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis