Browse Element(s) Details


Os.14407.1.S1_at

Description gb:AK100025.1
DB_XREF= gi:32985234
TID=Os.14407.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146H09, full insert sequence.
FL= gb:AK100025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0189011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01850Os.5795.1.S1_at11/118+513314..517530hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g01860NANA8+522751..523306hypothetical protein
LOC_Os08g01870Os.52705.1.S1_at11/118+530021..532685Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01880Os.10492.1.S1_at11/118+533457..535261synaptobrevin-related family protein, putative, expressed
LOC_Os08g01890Os.14407.1.S1_at11/118+540492..543049expressed protein
LOC_Os08g01900Os.27514.1.S1_at11/118+545227..550574U-box domain containing protein, expressed
LOC_Os08g01910Os.51228.2.A1_at1/118+551014..552278expressed protein
LOC_Os08g01920Os.52391.1.S1_x_at11/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01920Os.17052.2.S1_at1/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01930Os.5582.2.S1_x_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S2_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S1_a_at11/118+566509..571999KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14407.1.S1_at--683--971Chr08:541054..541078 (25 bp)
AGGAGGTCCACACCCAGCAAGATAT
LOC_Os08g01890
Os.14407.1.S1_at--931--7351Chr08:541013..541037 (25 bp)
GTGAAGAGTTCATCCAGGCTATCAG
LOC_Os08g01890
Os.14407.1.S1_at--114--8211Chr08:540989..541013 (25 bp)
GGAATAACGGTACACGATGCACTTA
LOC_Os08g01890
Os.14407.1.S1_at--817--8971Chr08:540893..540917 (25 bp)
TGAACCTCACTTCGACCATATTGGA
LOC_Os08g01890
Os.14407.1.S1_at--915--1211Chr08:540862..540886 (25 bp)
AGTTACTCACCATTCTTCATTGGCA
LOC_Os08g01890
Os.14407.1.S1_at--927--491Chr08:540816..540840 (25 bp)
ATCGGCACACATACTCCATGAGGAG
LOC_Os08g01890
Os.14407.1.S1_at--164--9451Chr08:540742..540766 (25 bp)
TCGGAGACGCCTTTCGATGAGTCGT
LOC_Os08g01890
Os.14407.1.S1_at--72--8991Chr08:540683..540707 (25 bp)
TGAAGATTACTTCACCTGCCCTGAA
LOC_Os08g01890
Os.14407.1.S1_at--219--9171Chr08:540667..540691 (25 bp)
TGCCCTGAAGCTGATTCCTGAGTAT
LOC_Os08g01890
Os.14407.1.S1_at--7--10331Chr08:540607..540631 (25 bp)
TTTCACCTCCCATTCTTTTTATTAT
LOC_Os08g01890
Os.14407.1.S1_at--584--9551Chr08:540546..540570 (25 bp)
TCTTTCCCCATCCATTGTAATGACT
LOC_Os08g01890
Target Sequence 
AGGAGGTCCACACCCAGCAAGATATGGTGCTTCAAACATCAGTGAAGAGTTCATCCAGGCTATCAGGAATAACGGTACAC
GATGCACTTACAACTCGAAGCCCACTTCTGTCTGCTATCTGTTTGCTAGGAAGTNTGCTCCTAGCGCTCTCGGGCCATTG
ATGAACCTCACTTCGACCATATTGGACTTTTGAGTTACTCACCATTCTTCATTGGCATCACGCTACCGGACTATCTCCAT
CGGCACACATACTCCATGAGGAGTAGCGGTACACTATACATGTTTGGGGGCATGTATCGCATGACAGATGGATCGGAGAC
GCCTTTCGATGAGTCGTCACCCATCTCTGATGGATGATGCTGTGCGGGCAGTGAAGATTACTTCACCTGCCCTGAAGCTG
ATTCCTGAGTATAGGATGAATGGAGCTGCATACGGAGAGGACTTTTGTTTCACCTCCCATTCTTTTTATTATATCATAGC
TATATGATATTAGAGCTTTTCTTTTTCTTCTTTCCCCATCCATTGTAATGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis