Browse Element(s) Details


Os.17052.2.S1_at

Description gb:CB624651
DB_XREF= gi:29619639
DB_XREF=OSIIEa13E21.r
CLONE=OSIIEa13E21
TID=Os.17052.2
CNT=23
FEA=EST
TIER=Stack
STK=10
UG=Os.17052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107L23, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g223902/11shoot gravitropism 2, putative, expressed
LOC_Os08g019201/11shoot gravitropism 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22350Os.6847.1.S1_at11/117+12542517..12548363Glucose-6-phosphate 1-dehydrogenase 2, chloroplast precursor, putative, expressed
LOC_Os07g22360OsAffx.28540.1.S1_at11/117+12550236..12550802hypothetical protein
LOC_Os07g22370OsAffx.5401.1.S1_at11/117+12553697..12554201hypothetical protein
LOC_Os07g22380OsAffx.28520.1.S1_at1/117+12555970..12561739retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22390Os.17052.2.S1_at2/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22390Os.52391.1.S1_x_at1/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22400Os.11383.1.S1_a_at11/117+12572886..12577971DNA primase large subunit, putative, expressed
LOC_Os07g22410Os.45173.5.S1_x_at4/117+12581715..12592425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22410Os.47999.2.A1_x_at2/117+12581715..12592425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22410Os.45173.1.S1_x_at2/117+12581715..12592425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22410Os.47999.3.A1_x_at1/117+12581715..12592425retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009630biological_processgravitropism
GO:0009660biological_processamyloplast organization and biogenesis
GO:0009959biological_processnegative gravitropism
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008970molecular_functionphospholipase A1 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17052.2.S1_at--318--3072Chr07:12567724..12567748 (25 bp)
AATCTTCCTGATGGTATGGACGACC
LOC_Os07g22390
Os.17052.2.S1_at--441--8531Chr07:12567740..12567764 (25 bp)
TGGACGACCAATTGTATTCTTCTCA
LOC_Os07g22390
Os.17052.2.S1_at--872--5831Chr07:12568050..12568074 (25 bp)
GACCTATCAGTGTATTTCAACCAAC
NONE
Os.17052.2.S1_at--445--10331Chr07:12568088..12568112 (25 bp)
TTTCATCTGATGGTCGCTGCAACTT
NONE
Os.17052.2.S1_at--919--3411Chr07:12568170..12568194 (25 bp)
CATCTTCCACTTCTACAAGGCAACT
NONE
Os.17052.2.S1_at--110--1011Chr07:12568253..12568277 (25 bp)
AGGATCATCCTTTTGCTAGCAGTAA
NONE
Os.17052.2.S1_at--497--5031Chr07:12568271..12568295 (25 bp)
GCAGTAAGCACATTCATCGCTATGA
NONE
Os.17052.2.S1_at--365--671Chr07:12568292..12568316 (25 bp)
ATGAAGATGAACCACTCACCAACCC
NONE
Os.17052.2.S1_at--623--3251Chr07:12568311..12568335 (25 bp)
CAACCCTACCACTATTACTATGCTA
NONE
Os.17052.2.S1_at--411--9651Chr07:12568361..12568385 (25 bp)
TCAGAAGTACTGAGCTGCCTTACAT
NONE
Os.17052.2.S1_at--470--5891Chr07:12568372..12568396 (25 bp)
GAGCTGCCTTACATATCTTACATAC
NONE
Target Sequence 
AATCTTCCTGATGGTATGGACGACCAATTGTATTCTTCTCANATCTTTTCAGGCTACTGGAATAGTGGAAGCTGTGGAGG
ATCTACTCAGATGTTGATCGAAATGGTGCTGAATTTGGGAGCTGTTGTTCTCAATTGCCGTGACCTATCAGTGTATTTCA
ACCAACGTGATCCTCCACGTTTCATCTGATGGTCGCTGCAACTTGAAGAAAGGGTGGATGAAGTTTGCAAGGCACAATCA
CATATATGCTGGATTAGTATGCATCTTCCACTTCTACAAGGCAACTCACATTGAAGTAACTATCGATGTTCTGTGAACAG
CATCTGAACGATCATAACTATATTAGGATCATCCTTTTGCTAGCAGTAAGCACATTCATCGCTATGAAGATGAACCACTC
ACCAACCCTACCACTATTACTATGCTAATTAGCTNTGCGTCTTCACTTCTTATCAGAAGTACTGAGCTGCCTTACATATC
TTACATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17052.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis