Browse Element(s) Details


Os.11383.1.S1_a_at

Description gb:AK101812.1
DB_XREF= gi:32987021
TID=Os.11383.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066O22, full insert sequence.
FL= gb:AK101812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2240011/11DNA primase large subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22350Os.6847.1.S1_at11/117+12542517..12548363Glucose-6-phosphate 1-dehydrogenase 2, chloroplast precursor, putative, expressed
LOC_Os07g22360OsAffx.28540.1.S1_at11/117+12550236..12550802hypothetical protein
LOC_Os07g22370OsAffx.5401.1.S1_at11/117+12553697..12554201hypothetical protein
LOC_Os07g22380OsAffx.28520.1.S1_at1/117+12555970..12561739retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22390Os.17052.2.S1_at2/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22390Os.52391.1.S1_x_at1/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22400Os.11383.1.S1_a_at11/117+12572886..12577971DNA primase large subunit, putative, expressed
LOC_Os07g22410Os.45173.5.S1_x_at4/117+12581715..12592425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22410Os.47999.2.A1_x_at2/117+12581715..12592425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22410Os.45173.1.S1_x_at2/117+12581715..12592425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22410Os.47999.3.A1_x_at1/117+12581715..12592425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22420OsAffx.8243.1.S1_at1/117+12596180..12602468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22420OsAffx.1646.1.S1_x_at1/117+12596180..12602468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22420OsAffx.22722.1.S1_x_at1/117+12596180..12602468retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003896molecular_functionDNA primase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11383.1.S1_a_at--4--4871Chr07:12574387..12574411 (25 bp)
GCTAGCTTGCACGATGACTTTTGAG
LOC_Os07g22400
Os.11383.1.S1_a_at--754--5091Chr07:12574379..12574403 (25 bp)
GCACGATGACTTTTGAGGCAGAACA
LOC_Os07g22400
Os.11383.1.S1_a_at--364--3671Chr07:12574370..12574394 (25 bp)
CTTTTGAGGCAGAACATGGTGTCTC
LOC_Os07g22400
Os.11383.1.S1_a_at--523--811Chr07:12574355..12574379 (25 bp)
ATGGTGTCTCATGTGATACTGGAAT
LOC_Os07g22400
Os.11383.1.S1_a_at--311--7412Chr03:18648018..18648042 (25 bp)
GTGATACTGGAATCAATCATCCTAA
NONE
Os.11383.1.S1_a_at--10--9591Chr07:12574310..12574334 (25 bp)
TCAGTGAAAGCCAGAAAGTCTTGAA
LOC_Os07g22400
Os.11383.1.S1_a_at--2--5031Chr07:12574182..12574206 (25 bp)
GCAGTGCAGAGCCAAGGAACAACCT
LOC_Os07g22400
Os.11383.1.S1_a_at--853--2631Chr07:12574162..12574186 (25 bp)
AACCTAAACTGTAATGCTGCTGGCA
LOC_Os07g22400
Os.11383.1.S1_a_at--357--9111Chr07:12574148..12574172 (25 bp)
TGCTGCTGGCAAAAGTCAGTCCATC
LOC_Os07g22400
Os.11383.1.S1_a_at--932--2831Chr07:12574136..12574160 (25 bp)
AAGTCAGTCCATCCAAATGCGGAAT
LOC_Os07g22400
Os.11383.1.S1_a_at--105--771Chr07:12574131..12574155 (25 bp)
AGTCCATCCAAATGCGGAATTTCAG
LOC_Os07g22400
Target Sequence 
GCTAGCTTGCACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTACTTCA
GTGAAAGCCAGAAAGTCTTGAAAGCAAAGAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
AAAGTCAGTCCATCCAAATGCGGAATTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11383.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis