Browse Element(s) Details


Os.52391.1.S1_x_at

Description gb:AK066813.1
DB_XREF= gi:32976831
TID=Os.52391.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.52391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087B12, full insert sequence.
FL= gb:AK099475.1 gb:AK066813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0192011/11shoot gravitropism 2, putative, expressed
LOC_Os07g223901/11shoot gravitropism 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01870Os.52705.1.S1_at11/118+530021..532685Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01880Os.10492.1.S1_at11/118+533457..535261synaptobrevin-related family protein, putative, expressed
LOC_Os08g01890Os.14407.1.S1_at11/118+540492..543049expressed protein
LOC_Os08g01900Os.27514.1.S1_at11/118+545227..550574U-box domain containing protein, expressed
LOC_Os08g01910Os.51228.2.A1_at1/118+551014..552278expressed protein
LOC_Os08g01920Os.52391.1.S1_x_at11/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01920Os.17052.2.S1_at1/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01930Os.5582.2.S1_x_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S2_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S1_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01940Os.19493.1.S1_at10/118+573933..580109expressed protein
LOC_Os08g01950Os.57091.1.S1_at10/118+588119..591691HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01950OsAffx.16783.1.S1_x_at2/118+588119..591691HCBT-like putative defense response protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009630biological_processgravitropism
GO:0009660biological_processamyloplast organization and biogenesis
GO:0009959biological_processnegative gravitropism
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008970molecular_functionphospholipase A1 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52391.1.S1_x_at--1070--6351Chr08:555152..555176 (25 bp)
GATCCAATTGCTGAAGAGACTCCCT
LOC_Os08g01920
Os.52391.1.S1_x_at--290--591Chr08:555151..555175 (25 bp)
ATCCAATTGCTGAAGAGACTCCCTT
LOC_Os08g01920
Os.52391.1.S1_x_at--1162--10711Chr08:555145..555169 (25 bp)
TTGCTGAAGAGACTCCCTTGACGTT
LOC_Os08g01920
Os.52391.1.S1_x_at--714--9111Chr08:555144..555168 (25 bp)
TGCTGAAGAGACTCCCTTGACGTTT
LOC_Os08g01920
Os.52391.1.S1_x_at--1058--4731Chr08:555143..555167 (25 bp)
GCTGAAGAGACTCCCTTGACGTTTT
LOC_Os08g01920
Os.52391.1.S1_x_at--279--3711Chr08:555142..555166 (25 bp)
CTGAAGAGACTCCCTTGACGTTTTC
LOC_Os08g01920
Os.52391.1.S1_x_at--997--8991Chr08:555141..555165 (25 bp)
TGAAGAGACTCCCTTGACGTTTTCA
LOC_Os08g01920
Os.52391.1.S1_x_at--51--5991Chr08:555137..555161 (25 bp)
GAGACTCCCTTGACGTTTTCAGATA
LOC_Os08g01920
Os.52391.1.S1_x_at--1154--5711Chr08:555135..555159 (25 bp)
GACTCCCTTGACGTTTTCAGATAAT
LOC_Os08g01920
Os.52391.1.S1_x_at--636--5752Chr07:12567639..12567663 (25 bp)
GACGTTTTCAGATAATTCATTAGTT
LOC_Os07g22390
Os.52391.1.S1_x_at--193--10671Chr08:554882..555060 (25 bp)
TTCCTGATGGATATGCTATGATAAT
LOC_Os08g01920
Target Sequence 
GATCCAATTGCTGAAGAGACTCCCTTGACGTTTTCAGATAATTCATTAGTTAAGGAATTNTCAAGAAAAGTGNGAACTTN
TTCAAGAAAATNTGAGAACGATTCAAGCTGNGAATNTTCCTGATGGATATGCTATGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52391.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis