Browse Element(s) Details


Os.57091.1.S1_at

Description gb:AK110905.1
DB_XREF= gi:32996114
TID=Os.57091.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B07, full insert sequence.
FL= gb:AK110905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0195010/11HCBT-like putative defense response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01920Os.52391.1.S1_x_at11/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01920Os.17052.2.S1_at1/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01930Os.5582.2.S1_x_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S2_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S1_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01940Os.19493.1.S1_at10/118+573933..580109expressed protein
LOC_Os08g01950Os.57091.1.S1_at10/118+588119..591691HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01950OsAffx.16783.1.S1_x_at2/118+588119..591691HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01960NANA8+604175..605776HCBT-like putative defense response protein, putative
LOC_Os08g01970NANA8+613255..616064transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57091.1.S1_at--814--3791Chr08:590204..590228 (25 bp)
CTCCCCTCATCGTGATTAAACTTCA
LOC_Os08g01950
Os.57091.1.S1_at--1034--6551Chr08:590191..590215 (25 bp)
GATTAAACTTCATTGCTCTACCAAA
LOC_Os08g01950
Os.57091.1.S1_at--795--1691NONE
ACCAAAATATGGTGCTCTTTAGGGA
NONE
Os.57091.1.S1_at--46--211Chr08:588395..588419 (25 bp)
ATATATTAATTTCGGCTTTAGCCCA
LOC_Os08g01950
Os.57091.1.S1_at--428--8291Chr08:588382..588406 (25 bp)
GGCTTTAGCCCAATCAACAAAGATG
LOC_Os08g01950
Os.57091.1.S1_at--447--1311Chr08:588349..588373 (25 bp)
AGATGTAATCCATTCCTCTTGCATG
LOC_Os08g01950
Os.57091.1.S1_at--119--9751Chr08:588344..588368 (25 bp)
TAATCCATTCCTCTTGCATGCAAAA
LOC_Os08g01950
Os.57091.1.S1_at--882--7811Chr08:588306..588330 (25 bp)
GGTCATATCAATTTTCGTTAACTTT
LOC_Os08g01950
Os.57091.1.S1_at--915--10251Chr08:588221..588245 (25 bp)
TTTGTCTTATTTTCCATCCTATGTT
LOC_Os08g01950
Os.57091.1.S1_at--160--7951Chr08:588181..588205 (25 bp)
GGATTTGCGCAAACAATTTTGTGAT
LOC_Os08g01950
Os.57091.1.S1_at--1133--2132Chr08:588122..588146 (25 bp)
ACAGATTTTATCTATTGTCTAGCAA
LOC_Os08g01950
Target Sequence 
CTCCCCTCATCGTGATTAAACTTCATTGCTCTACCAAAATATGGTGCTCTTTAGGGAAATATATTAATTTCGGCTTTAGC
CCAATCAACAAAGATGTGACGAGAAGATGTAATCCATTCCTCTTGCATGCAAAATCATGGATACAATGGTCATATCAATT
TTCGTTAACTTTGGATGAATATTTACTGATAGGATTACTATCTGAATAATTTGTTTGTTGGTGNANNNAATATTTGTCTT
ATTTTCCATCCTATGTTAGTTACATTTTATTTGGATTTGCGCAAACAATTTTGTGATAATTAATTGGTTGTAATTTCTGT
TGAAGGAAAGGACAGATTTTATCTATTGTCTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis