Browse Element(s) Details


Os.19493.1.S1_at

Description gb:AK073257.1
DB_XREF= gi:32983280
TID=Os.19493.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022F02, full insert sequence.
FL= gb:AK072300.1 gb:AK073257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0194010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01900Os.27514.1.S1_at11/118+545227..550574U-box domain containing protein, expressed
LOC_Os08g01910Os.51228.2.A1_at1/118+551014..552278expressed protein
LOC_Os08g01920Os.52391.1.S1_x_at11/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01920Os.17052.2.S1_at1/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01930Os.5582.2.S1_x_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S2_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S1_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01940Os.19493.1.S1_at10/118+573933..580109expressed protein
LOC_Os08g01950Os.57091.1.S1_at10/118+588119..591691HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01950OsAffx.16783.1.S1_x_at2/118+588119..591691HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01960NANA8+604175..605776HCBT-like putative defense response protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19493.1.S1_at--243--4851Chr08:574381..574405 (25 bp)
GCTACGCGTTCCAGACGCCGGAGTC
LOC_Os08g01940
Os.19493.1.S1_at--497--1451Chr08:574204..574228 (25 bp)
AGAAGTTCGACAAGGTAGCGAGCAT
LOC_Os08g01940
Os.19493.1.S1_at--286--9991Chr08:574189..574213 (25 bp)
TAGCGAGCATGCTGAGGCTGCCTGA
LOC_Os08g01940
Os.19493.1.S1_at--606--571Chr08:574145..574169 (25 bp)
ATCCTTCGGGCGCTCTATGATACTC
LOC_Os08g01940
Os.19493.1.S1_at--216--10131Chr08:574130..574154 (25 bp)
TATGATACTCTTCGCCAATTGCTGC
LOC_Os08g01940
Os.19493.1.S1_at--799--9111Chr08:574111..574135 (25 bp)
TGCTGCTCCCATCATGATCATGAGT
LOC_Os08g01940
Os.19493.1.S1_at--994--6431Chr08:574080..574104 (25 bp)
GATCATGAGTCATAACAACTGATGT
LOC_Os08g01940
Os.19493.1.S1_at--943--9831Chr08:574039..574063 (25 bp)
TTGAATTACAACTGGAATACGCTTT
LOC_Os08g01940
Os.19493.1.S1_at--692--5231Chr08:574025..574049 (25 bp)
GAATACGCTTTGGTTCCAGATTTAA
LOC_Os08g01940
Os.19493.1.S1_at--410--411Chr08:573992..574016 (25 bp)
ATCATACCACTTCAAACACATGTAT
LOC_Os08g01940
Os.19493.1.S1_at--569--2551Chr08:572190..572211 (22 bp)
AACTGCACAGTTCGATTCATAGGAC
NONE
Target Sequence 
GCTACGCGTTCCAGACGCCGGAGTCGTGGACGGCCGACGGCGGCTACCGGGCGCTGCACTACATGCGCCCGCTCGGCGTC
TGGGCGATGCAGTGGGCGCTGTCGCCGCCGGTGCTCCACAAGGAGCACAGGGTGGCGGCGGTGGCGGCCTCGCCGGAGGA
CGCCGCACTGGGGCAGGAGAAGTTCGACAAGGTAGCGAGCATGCTGAGGCTGCCTGAGGAGCAGCAGCACAAGGGGATCC
TTCGGGCGCTCTATGATACTCTTCGCCAATTGCTGCTCCCATCATGATCATGAGTCATCATGATCATGAGTCATAACAAC
TGATGTAAGATTATCATTGCAATTGAATTACAACTGGAATACGCTTTGGTTCCAGATTTAATTAGTTANATCATACCACT
TCAAACACATGTATAAACTGCACAGTTCGATTCATAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis