Browse Element(s) Details


Os.5582.2.S1_x_at

Description gb:AK068995.1
DB_XREF= gi:32979019
TID=Os.5582.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169C15, full insert sequence.
FL= gb:AK068995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0193011/11KH domain containing protein, expressed
LOC_Os12g163504/113-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01890Os.14407.1.S1_at11/118+540492..543049expressed protein
LOC_Os08g01900Os.27514.1.S1_at11/118+545227..550574U-box domain containing protein, expressed
LOC_Os08g01910Os.51228.2.A1_at1/118+551014..552278expressed protein
LOC_Os08g01920Os.52391.1.S1_x_at11/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01920Os.17052.2.S1_at1/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01930Os.5582.2.S1_x_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S2_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S1_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01940Os.19493.1.S1_at10/118+573933..580109expressed protein
LOC_Os08g01950Os.57091.1.S1_at10/118+588119..591691HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01950OsAffx.16783.1.S1_x_at2/118+588119..591691HCBT-like putative defense response protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006574biological_processvaline catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0008152biological_processmetabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0003676molecular_functionnucleic acid binding
GO:0003824molecular_functioncatalytic activity
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5582.2.S1_x_at--1094--10052Chr12:9352778..9352802 (25 bp)
TAGTCTCGGTGGCTTGATAGTTCTT
LOC_Os12g16350
Os.5582.2.S1_x_at--1087--6472Chr12:9352793..9352817 (25 bp)
GATAGTTCTTCATAGTTCGTCTAGA
LOC_Os12g16350
Os.5582.2.S1_x_at--569--5052Chr12:9352819..9352843 (25 bp)
GCAGAACTTACCTTCGTGTATGATA
LOC_Os12g16350
Os.5582.2.S1_x_at--821--7911Chr08:569366..569390 (25 bp)
GGTTGGACTTCAGTACTTGATCGTT
LOC_Os08g01930
Os.5582.2.S1_x_at--550--6831Chr08:569439..569463 (25 bp)
GTTTCAATCTTTAGTCGGCTAGTCT
LOC_Os08g01930
Os.5582.2.S1_x_at--578--2551Chr08:569529..569553 (25 bp)
AACTGACTCATCAAGGTTCCTCTCG
LOC_Os08g01930
Os.5582.2.S1_x_at--977--3792Chr12:9353031..9353055 (25 bp)
CTCGCTTCCAGTTTCCATGATTTAT
LOC_Os12g16350
Os.5582.2.S1_x_at--708--2151Chr08:569624..569648 (25 bp)
ACAGCTAGGCTTTCATCATGGGCTC
LOC_Os08g01930
Os.5582.2.S1_x_at--1159--2091Chr08:569650..569674 (25 bp)
ACATCCTTCATCCATTACATGCACA
LOC_Os08g01930
Os.5582.2.S1_x_at--1135--7931Chr08:569681..569705 (25 bp)
GGATATTGACCATTATCCCTTGCCC
LOC_Os08g01930
Os.5582.2.S1_x_at--1098--10691Chr08:569700..569724 (25 bp)
TTGCCCTTGCATGGTTTGTGTAGTT
LOC_Os08g01930
Target Sequence 
TAGTCTCGGTGGCTTGATAGTTCTTCATAGTTCGTCTAGAAGCAGAACTTACCTTCGTGTATGATAGTGTGGTTGGACTT
CAGTACTTGATCGTTAAAACCTTGGTGCTGTNNCATGATCAATGAACAATTNCTGTGGTACTAGTTTCAATCTTTAGTCG
GCTAGTCTTTTGAGTTTTGGTNACTGCTTACTGCTNGATGAGATCTGATTATGTTTCCTACATAAGAAGTCAGAACTGAC
TCATCAAGGTTCCTCTCGCTTCCAGTTTCCATGATTTATTTTGTTTGAAGGTGCCAATTTGGAGTTGGTTGGGTATCCTA
ATGCAGATACAGCTAGGCTTTCATCATGGGCTCCACATCCTTCATCCATTACATGCACAGAAGAGGGATATTGACCATTA
TCCCTTGCCCTTGCATGGTTTGTGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5582.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis