Browse Element(s) Details


Os.27514.1.S1_at

Description gb:AK102080.1
DB_XREF= gi:32987289
TID=Os.27514.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-109-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082K05, full insert sequence.
FL= gb:AK106557.1 gb:AK102080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0190011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01860NANA8+522751..523306hypothetical protein
LOC_Os08g01870Os.52705.1.S1_at11/118+530021..532685Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01880Os.10492.1.S1_at11/118+533457..535261synaptobrevin-related family protein, putative, expressed
LOC_Os08g01890Os.14407.1.S1_at11/118+540492..543049expressed protein
LOC_Os08g01900Os.27514.1.S1_at11/118+545227..550574U-box domain containing protein, expressed
LOC_Os08g01910Os.51228.2.A1_at1/118+551014..552278expressed protein
LOC_Os08g01920Os.52391.1.S1_x_at11/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01920Os.17052.2.S1_at1/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01930Os.5582.2.S1_x_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S2_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S1_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01940Os.19493.1.S1_at10/118+573933..580109expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27514.1.S1_at--679--2791Chr08:549968..549992 (25 bp)
AAGAGGGTGCTGTGCCTCCTCTAGT
LOC_Os08g01900
Os.27514.1.S1_at--431--6671Chr08:549991..550015 (25 bp)
GTTGCATTGTCACAGTCAGGCACGC
LOC_Os08g01900
Os.27514.1.S1_at--463--1471Chr08:550152..550173 (22 bp)
AGAAGGCACAGGCTCTTCTCAGCTA
LOC_Os08g01900
Os.27514.1.S1_at--107--9891Chr08:550172..550196 (25 bp)
TACTTTCGCAGCCAAAGGCACGGGA
LOC_Os08g01900
Os.27514.1.S1_at--1073--10491Chr08:550242..550266 (25 bp)
TTAAGCATCTCCTCTGATTCCTTCA
LOC_Os08g01900
Os.27514.1.S1_at--615--3611Chr08:550275..550299 (25 bp)
CTTGGCTCCTCATATTGTTGTTGTT
LOC_Os08g01900
Os.27514.1.S1_at--911--10811Chr08:550305..550329 (25 bp)
TTGGGTGGCCCTATGTATTGTTTAT
LOC_Os08g01900
Os.27514.1.S1_at--910--6251Chr08:550397..550421 (25 bp)
GATGGTGTAACTTTTGGTTCTCTTT
LOC_Os08g01900
Os.27514.1.S1_at--655--6951Chr08:550466..550490 (25 bp)
GTAGCAACTTACCTATTCAATGGGA
LOC_Os08g01900
Os.27514.1.S1_at--904--4871Chr08:550495..550519 (25 bp)
GCTTTGTATATGCTATTAACCCTGA
LOC_Os08g01900
Os.27514.1.S1_at--170--7051Chr08:550543..550567 (25 bp)
GTAAAATTCGATATTGCCCTGCATG
LOC_Os08g01900
Target Sequence 
AAGAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAGAAGGCACAGGCTCTTCTC
AGCTACTTTCGCAGCCAAAGGCACGGGAATTCAGCAAGGAGATGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCA
TCTCCTCTGATTCCTTCAGGCATCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTA
TAGTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGTTGTTGAGATGGTGTAACT
TTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGTATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGG
GATTTTGCTTTGTATATGCTATTAACCCTGACATTATGATTGTTTTGAATGGTTGTAAAATTCGATATTGCCCTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis