Browse Element(s) Details


Os.10492.1.S1_at

Description gb:AK067360.1
DB_XREF= gi:32977378
TID=Os.10492.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102A15, full insert sequence.
FL= gb:AK067360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0188011/11synaptobrevin-related family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01840Os.7406.1.S1_at11/118+507410..511930survival motor neuron domain containing 1, putative, expressed
LOC_Os08g01850Os.5795.1.S1_at11/118+513314..517530hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g01860NANA8+522751..523306hypothetical protein
LOC_Os08g01870Os.52705.1.S1_at11/118+530021..532685Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01880Os.10492.1.S1_at11/118+533457..535261synaptobrevin-related family protein, putative, expressed
LOC_Os08g01890Os.14407.1.S1_at11/118+540492..543049expressed protein
LOC_Os08g01900Os.27514.1.S1_at11/118+545227..550574U-box domain containing protein, expressed
LOC_Os08g01910Os.51228.2.A1_at1/118+551014..552278expressed protein
LOC_Os08g01920Os.52391.1.S1_x_at11/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01920Os.17052.2.S1_at1/118+554655..564962shoot gravitropism 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10492.1.S1_at--873--531Chr08:533935..533959 (25 bp)
ATCCCGGTCATTGTGGGTGCGCCAT
LOC_Os08g01880
Os.10492.1.S1_at--465--7711Chr08:533921..533945 (25 bp)
GGGTGCGCCATGTGAAGATCATCAT
LOC_Os08g01880
Os.10492.1.S1_at--971--6351Chr08:533889..533913 (25 bp)
GATGCCATCATCTGCATACTGTTGT
LOC_Os08g01880
Os.10492.1.S1_at--913--311Chr08:533874..533898 (25 bp)
ATACTGTTGTTTGCTGCTTGGCTAG
LOC_Os08g01880
Os.10492.1.S1_at--103--4931Chr08:533859..533883 (25 bp)
GCTTGGCTAGCCGTTTGTAAGGGTT
LOC_Os08g01880
Os.10492.1.S1_at--121--2891Chr08:533841..533865 (25 bp)
AAGGGTTTCCAGTGTGTGTCTAGCT
LOC_Os08g01880
Os.10492.1.S1_at--812--6491Chr08:533576..533600 (25 bp)
GATAGATATGCTTCTCCTCTTGTAC
LOC_Os08g01880
Os.10492.1.S1_at--706--10591Chr08:533565..533589 (25 bp)
TTCTCCTCTTGTACATGGCAATTCG
LOC_Os08g01880
Os.10492.1.S1_at--606--91Chr08:533545..533569 (25 bp)
ATTCGAATGTACATACGCTTCACCC
LOC_Os08g01880
Os.10492.1.S1_at--822--4891Chr08:533529..533553 (25 bp)
GCTTCACCCCTTGTACATGAATACA
LOC_Os08g01880
Os.10492.1.S1_at--403--471Chr08:533473..533497 (25 bp)
ATCTGTTCGTGATACACCTGTACTA
LOC_Os08g01880
Target Sequence 
ATCCCGGTCATTGTGGGTGCGCCATGTGAAGATCATCATCGTCGTCGATGCCATCATCTGCATACTGTTGTTTGCTGCTT
GGCTAGCCGTTTGTAAGGGTTTCCAGTGTGTGTCTAGCTGAGGAAAAGAAATCCTGGCATGAGTTGTATAGCTATTGGAG
AAATGAGAAAGCTTTAATTTGTGGTGAGTTTTGATTTGTTGCTTTTCCGGAAAGGTAAATACTACCAGCCAAGAAAATGA
TGAATTGAGAGTTGTACCAGCGAAAATAATGCGGGGGGAGGGAGGCTGCAATTACCAAGATACAATATGTTGCTGATGAT
CAGATGGTGAAAATGGAGGCTCAATGCTGTAAACATGTAGATAGATATGCTTCTCCTCTTGTACATGGCAATTCGAATGT
ACATACGCTTCACCCCTTGTACATGAATACATGATAATGTGATAGGATTATTAAAAGATTTCATCTGTTCGTGATACACC
TGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis