Browse Element(s) Details


OsAffx.5401.1.S1_at

Description tigr:9635.m02112
TID=OsAffx.5401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2237011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22340NANA7+12539465..12539676hypothetical protein
LOC_Os07g22350Os.6847.1.S1_at11/117+12542517..12548363Glucose-6-phosphate 1-dehydrogenase 2, chloroplast precursor, putative, expressed
LOC_Os07g22360OsAffx.28540.1.S1_at11/117+12550236..12550802hypothetical protein
LOC_Os07g22370OsAffx.5401.1.S1_at11/117+12553697..12554201hypothetical protein
LOC_Os07g22380OsAffx.28520.1.S1_at1/117+12555970..12561739retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22390Os.17052.2.S1_at2/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22390Os.52391.1.S1_x_at1/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22400Os.11383.1.S1_a_at11/117+12572886..12577971DNA primase large subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5401.1.S1_at--70--9412Chr07:12553736..12553760 (25 bp)
TCGTCTTTGAGATTGAGGTGGCTTT
LOC_Os07g22370
OsAffx.5401.1.S1_at--105--3691Chr07:12553757..12553781 (25 bp)
CTTTGGATGCGCTGGCAGGACCAAT
LOC_Os07g22370
OsAffx.5401.1.S1_at--346--971Chr07:12553773..12553797 (25 bp)
AGGACCAATCCAGGCCATGGGACAA
LOC_Os07g22370
OsAffx.5401.1.S1_at--245--8171Chr07:12553801..12553825 (25 bp)
GGAACTACCTTGCAATGATCGAGAC
LOC_Os07g22370
OsAffx.5401.1.S1_at--1039--5971Chr07:12553821..12553845 (25 bp)
GAGACATCCAGTTGTTTCAAGCTTG
LOC_Os07g22370
OsAffx.5401.1.S1_at--579--4351Chr07:12553855..12554030 (25 bp)
CCAGATTGGGCAGATCACGGATGTT
LOC_Os07g22370
OsAffx.5401.1.S1_at--321--8971Chr07:12554030..12554054 (25 bp)
TGAAACTATCCACGAGCTTGTCCAG
LOC_Os07g22370
OsAffx.5401.1.S1_at--622--9211Chr07:12554050..12554074 (25 bp)
TCCAGCTAGGAGGACTTCTAAGCCA
LOC_Os07g22370
OsAffx.5401.1.S1_at--523--1691Chr07:12554070..12554094 (25 bp)
AGCCAAATTGCCCTGACTGAAAATG
LOC_Os07g22370
OsAffx.5401.1.S1_at--1159--5471Chr07:12554119..12554143 (25 bp)
GAACAACACTGGAGGGTATACTGCC
LOC_Os07g22370
OsAffx.5401.1.S1_at--716--6891Chr07:12554134..12554158 (25 bp)
GTATACTGCCCAAAGTGCATATCGT
LOC_Os07g22370
Target Sequence 
TCGTCTTTGAGATTGAGGTGGCTTTGGATGCGCTGGCAGGACCAATCCAGGCCATGGGACAAGATGGAACTACCTTGCAA
TGATCGAGACATCCAGTTGTTTCAAGCTTGTAACAAGATCCAGATTGGGCAGATCACGGATGTTGAAACTATCCACGAGC
TTGTCCAGCTAGGAGGACTTCTAAGCCAAATTGCCCTGACTGAAAATGAGGAGGATAAGACTGCTGGACAAGGAACAACA
CTGGAGGGTATACTGCCCAAAGTGCATATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis