Browse Element(s) Details

Os.23940.1.A1_at

Description

gb:AK121823.1
DB_XREF= gi:37991446
TID=Os.23940.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099F21, full insert sequence.
FL= gb:AK121823.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g01680	11/11	Chromatin assembly factor 1 subunit B, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g01620	Os.7321.1.S1_at	11/11	8	+	361414..364631	Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630	Os.49890.1.S1_at	11/11	8	+	365110..367507	DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640	Os.49986.1.S1_at	11/11	8	+	367770..370405	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640	Os.52705.1.S1_at	3/11	8	+	367770..370405	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650	Os.53118.1.S1_at	9/11	8	+	374960..377639	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660	Os.7391.1.S1_x_at	11/11	8	+	377753..381899	Mago nashi protein homolog, putative, expressed
LOC_Os08g01660	Os.7391.1.S1_at	11/11	8	+	377753..381899	Mago nashi protein homolog, putative, expressed
LOC_Os08g01670	Os.5834.1.S1_at	11/11	8	+	383315..384849	pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g01680	Os.23940.1.A1_at	11/11	8	+	388883..393753	Chromatin assembly factor 1 subunit B, putative, expressed
LOC_Os08g01690	Os.51744.1.A1_at	11/11	8	+	393788..395077	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01700	OsAffx.5676.1.S1_at	11/11	8	+	413088..413999	Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006334	biological_process	nucleosome assembly
GO:0007186	biological_process	G-protein coupled receptor protein signaling pathway
GO:0009933	biological_process	meristem organization
GO:0045814	biological_process	negative regulation of gene expression, epigenetic
GO:0005634	cellular_component	nucleus
GO:0005678	cellular_component	chromatin assembly complex
GO:0005834	cellular_component	heterotrimeric G-protein complex
GO:0000166	molecular_function	nucleotide binding
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.23940.1.A1_at--814--241	1	Chr08:393021..393045 (25 bp)	AAAAGCCAGTTCTGCAGCCGTTGAA	LOC_Os08g01680
Os.23940.1.A1_at--1161--227	1	Chr08:393339..393363 (25 bp)	AAATGACAGGCCTTCAGCGGTGGAC	LOC_Os08g01680
Os.23940.1.A1_at--934--279	1	Chr08:393397..393421 (25 bp)	AAGATGGAAGTCACTCCTGTCGCTG	LOC_Os08g01680
Os.23940.1.A1_at--540--331	1	Chr08:393408..393432 (25 bp)	CACTCCTGTCGCTGTACAAGTGACA	LOC_Os08g01680
Os.23940.1.A1_at--1094--745	1	Chr08:393442..393466 (25 bp)	GTGTCGACCAAGAACAGCGCATCAA	LOC_Os08g01680
Os.23940.1.A1_at--967--541	1	Chr08:393480..393504 (25 bp)	GAAGCGAATTACTCCTATTGCAATC	LOC_Os08g01680
Os.23940.1.A1_at--46--987	1	Chr08:393576..393600 (25 bp)	TACATTTAGGTCACCCTGTAAAGAA	LOC_Os08g01680
Os.23940.1.A1_at--678--223	1	Chr08:393599..393623 (25 bp)	AAATTTATTTTGCAACGCGTGTTCA	LOC_Os08g01680
Os.23940.1.A1_at--742--553	1	Chr08:393642..393666 (25 bp)	GAAACTCCGGTTCTGCTAATGGCAC	LOC_Os08g01680
Os.23940.1.A1_at--411--219	1	Chr08:393688..393712 (25 bp)	ACACAGCTTGTGTCAGTGAGCACAT	LOC_Os08g01680
Os.23940.1.A1_at--317--207	1	Chr08:393727..393751 (25 bp)	ACTTGCAGATACCAGATGTCTCTAT	LOC_Os08g01680

Target Sequence

AAAAGCCAGTTCTGCAGCCGTTGAAGTNACACCATCACCACCAGTGCTGGCCCAGANCAATATATTGATGACAAAGGACG
TTGCTGAAGGAAATGCGNCAAGTGAAAATGACAGGCCTTCAGCGGTGGACAATATGGAAGTTGATGTTGGTGAAAACAAA
GCTAAGATGGAAGTCACTCCTGTCGCTGTACAAGTGACAGCGCCGCCAGTGTCGACCAAGAACAGCGCATCAAGTAAGCC
TACCAAGAAGCGAATTACTCCTATTGCAATCAACTAAGTAATGCAAAGTAATTAGGACCTAGGATTATGATATCTTCTGT
AGTGATAGCAAGTACAAGAATTTACATTTAGGTCACCCTGTAAAGAAATTTATTTTGCAACGCGTGTTCANCTTGTGGCC
TAACCCCAGAAACTCCGGTTCTGCTAATGGCACATAGTGGAAGCAGTTATATGGACACAGCTTGTGTCAGTGAGCACATT
TGGTTATAAATCAACTTGCAGATACCAGATGTCTCTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis