Browse Element(s) Details


Os.5834.1.S1_at

Description gb:AK070037.1
DB_XREF= gi:32980061
TID=Os.5834.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037I19, full insert sequence.
FL= gb:AK070037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0167011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01670Os.5834.1.S1_at11/118+383315..384849pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g01680Os.23940.1.A1_at11/118+388883..393753Chromatin assembly factor 1 subunit B, putative, expressed
LOC_Os08g01690Os.51744.1.A1_at11/118+393788..395077transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5834.1.S1_at--803--951Chr08:383784..383808 (25 bp)
AGGACTACGACCTGGCGACGGTGCA
LOC_Os08g01670
Os.5834.1.S1_at--137--4491Chr08:383752..383776 (25 bp)
GCCGGCGCCGAATACCCGCAGGTGT
LOC_Os08g01670
Os.5834.1.S1_at--221--331Chr08:383552..383576 (25 bp)
ATACTACTAGTACTGCATGCGTACG
LOC_Os08g01670
Os.5834.1.S1_at--58--4991Chr08:383538..383562 (25 bp)
GCATGCGTACGTGCTAAATACGTGT
LOC_Os08g01670
Os.5834.1.S1_at--80--6771Chr08:383488..383512 (25 bp)
GTTAATCCTGTGTGGTGCTGAGTGA
LOC_Os08g01670
Os.5834.1.S1_at--280--6171Chr08:383465..383489 (25 bp)
GAGGATATATATGTTCTTCTTGTAT
LOC_Os08g01670
Os.5834.1.S1_at--1161--6291Chr08:383429..383453 (25 bp)
GATGAGTTAATTACTGCCGTGCTGA
LOC_Os08g01670
Os.5834.1.S1_at--315--9171Chr08:383415..383439 (25 bp)
TGCCGTGCTGAAGCTTAGCATGCTG
LOC_Os08g01670
Os.5834.1.S1_at--813--10011Chr08:383400..383424 (25 bp)
TAGCATGCTGCATCTTGTACTTCAC
LOC_Os08g01670
Os.5834.1.S1_at--877--411Chr08:383389..383413 (25 bp)
ATCTTGTACTTCACTTTGGCTCCAG
LOC_Os08g01670
Os.5834.1.S1_at--299--3651Chr08:383376..383400 (25 bp)
CTTTGGCTCCAGTATAATTAGTCAC
LOC_Os08g01670
Target Sequence 
AGGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAG
AGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCAT
CGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACT
AGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTG
AGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTT
GTACTTCACTTTGGCTCCAGTATAATTAGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis