Browse Element(s) Details


Os.18706.1.S1_x_at

Description gb:AK100839.1
DB_XREF= gi:32986048
TID=Os.18706.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123E22, full insert sequence.
FL= gb:AK100839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0161010/11GDP-mannose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01570OsAffx.27394.1.S1_at4/118+328895..331475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g01580OsAffx.16778.1.S1_at11/118+335868..340386NB-ARC domain containing protein
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01670Os.5834.1.S1_at11/118+383315..384849pectinesterase inhibitor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015784biological_processGDP-mannose transport
GO:0005794cellular_componentGolgi apparatus
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005458molecular_functionGDP-mannose transporter activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18706.1.S1_x_at--1148--7251Chr08:355374..355398 (25 bp)
GTCCTAGTCGTAGGCCAAGCTTTAT
LOC_Os08g01610
Os.18706.1.S1_x_at--459--131Chr08:355314..355338 (25 bp)
ATTCAGAACAGGATGCTCGCTCGGA
LOC_Os08g01610
Os.18706.1.S1_x_at--133--3791Chr08:355299..355323 (25 bp)
CTCGCTCGGATTATGTTCCTGGGAA
LOC_Os08g01610
Os.18706.1.S1_x_at--679--5031Chr08:355268..355292 (25 bp)
GCAGATGTAAAGATCCTTCTCCAGC
LOC_Os08g01610
Os.18706.1.S1_x_at--720--5751Chr08:355053..355077 (25 bp)
GACGGGTCGCCGCATTTGTAATGTT
LOC_Os08g01610
Os.18706.1.S1_x_at--149--8471Chr08:354968..354992 (25 bp)
TGGCCTGCTGCTGTGTTGAGTATAC
LOC_Os08g01610
Os.18706.1.S1_x_at--1135--10491Chr08:354925..354949 (25 bp)
TTAATTTTGTGTTGCCCTTCCCTAT
LOC_Os08g01610
Os.18706.1.S1_x_at--946--4291Chr08:354905..354929 (25 bp)
CCTATATGTTCTTCTACACCGTGTA
LOC_Os08g01610
Os.18706.1.S1_x_at--552--3731Chr08:354892..354916 (25 bp)
CTACACCGTGTAGGGCTGAAGGAAA
LOC_Os08g01610
Os.18706.1.S1_x_at--178--8171Chr08:354872..354896 (25 bp)
GGAAAATGCCCAAGCTCCTCATGTG
LOC_Os08g01610
Os.18706.1.S1_x_at--584--211Chr08:354807..354831 (25 bp)
ATTTGAACTGACCTGACTTGTCCCA
NONE
Target Sequence 
GTCCTAGTCGTAGGCCAAGCTTTATAGGTTATACAAGGCAGAATTATTCTAGTCAGTCAGATTCAGAACAGGATGCTCGC
TCGGATTATGTTCCTGGGAAATTTGTGCAGATGTAAAGATCCTTCTCCAGCTAACAAGAAGAGAGATTGGCAACACATTT
GTTACTATGGGGCCATGGGGCTGCTTCAGTTCTTTTTCNNNNNNNNNNNTATGGACCCCCNTGTTGTCGCTCNCGTGGTT
GTGGTATNCGTCCTCACTTTCACTTACGNTCGAAAGGCCGATAATACTCAAATGCAGGCNAGTTTGGGGNAAAAAAANAA
CAATTGACGGGTCGCCGCATTTGTAATGTTGTGAAANTTGCAGCGGTTGGATNGAAATGGGATTGGTGTTTTTGTGCGTT
GCACGGCTGCTTGGCCTGCTGCTGTGTTGAGTATACTGTATATACTTGTGCAGTTTAATTTTGTGTTGCCCTTCCCTATA
TGTTCTTCTACACCGTGTAGGGCTGAAGGAAAATGCCCAAGCTCCTCATGTGCAGAACTCAAACTCATGGGATACAGTGA
TACTAGTGCAGAATTTGAACTGACCTGACTTGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18706.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis